Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PsrA regulog to Idiomarina loihiensis L2TR

Reference regulog properties
Source regulog: PsrA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Idiomarina loihiensis L2TR
Orthologous TF(s) IL0918
Regulated genes 5
Built upon 295 sites [see more]
Predicted regulatory interactions in Idiomarina loihiensis L2TR
Locus tag Position Score Sequence
Position: -133
Score: 6.1
Sequence: ATTCAAACGCATGTTTAAAT
Locus tag: IL0011
IL0011 -133 6.1 ATTCAAACGCATGTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: fatty oxidation complex, alpha subunit
Shewanella oneidensis MR-1 SO_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp W3-18-1 Sputw3181_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp ANA-3 Shewana3_0024 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-4 Shewmr4_0018 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-7 Shewmr7_0016 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella baltica OS155 Sbal_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella denitrificans OS217 Sden_0015 -149 6.1 AATTAAACGGCCGTTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0013 -161 6.1 AATTAAACGGCCGTTTAAAT
Shewanella amazonensis SB2B Sama_0032 -145 5.9 AATTAAACGATCGTTTTAAT
Shewanella loihica PV-4 Shew_0019 -161 6.1 AATTAAACAAGTGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_0018 -168 5.6 AACTAAACGGTCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_0016 -168 5.5 AACCAAACGACCGTTTAAAT
Shewanella piezotolerans WP3 swp_0035 -161 5.5 ATTCGAACACTCGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_0023 -228 6.1 AATCAAACACCCGTTTAAAT
Shewanella woodyi ATCC 51908 Swoo_0021 -166 6.1 AATCAAACAAGTGTTTAAAT
Position: -131
Score: 4.5
Sequence: TTTTATACACCTGTATCAAA
Locus tag: IL1040
IL1040 -131 4.5 TTTTATACACCTGTATCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2935
Ortholog function: oxidoreductase, short-chain dehydrogenase/reductase family
Shewanella oneidensis MR-1 SO_2935 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella putrefaciens CN-32 Sputcn32_2396 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella sp W3-18-1 Sputw3181_1612 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella sp ANA-3 Shewana3_1528 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella sp MR-4 Shewmr4_1468 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella sp MR-7 Shewmr7_1534 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella baltica OS155 Sbal_2694 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella denitrificans OS217 Sden_2473 -73 5.3 TTTAAAACAATCGTTTACTT
Shewanella frigidimarina NCIMB 400 Sfri_2572 -86 4.6 TATTAATCATTTGTTTCAAA
-73 5.3 TTTCAAACGGTCGTTTATTT
Shewanella amazonensis SB2B Sama_2121 -73 5.1 TTTTAAACAGCTGTATGACT
Shewanella loihica PV-4 Shew_2409 -87 4.4 AATCAGTCATTTGTTTTAAA
-74 4.4 TTTTAAACATTCGTTTCAGG
Shewanella pealeana ATCC 700345 Spea_1649 -86 4.5 GATTAATCGTTTGTTTAAAA
-73 4.9 TTTAAAACAGCTGTTTATCA
Shewanella halifaxensis HAW-EB4 Shal_2614 -73 4.9 TTTAAAACAGCTGTTTATCA
Shewanella piezotolerans WP3 swp_1930 -86 5.1 AATTAATCGTTTGTTTAAAA
-73 5 TTTAAAACAGCTGTTTACCA
Shewanella sediminis HAW-EB3 Ssed_1692 -86 5.1 AATTAATCATTTGTTTTAAA
Shewanella woodyi ATCC 51908 Swoo_2905 -86 5.1 AATTAATCATTTGTTTTAAA
Position: -97
Score: 5.4
Sequence: ATTCAAACGCCCGTTCAATT
Locus tag: IL1665
IL1665 -97 5.4 ATTCAAACGCCCGTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: oxidoreductase, acyl-CoA dehydrogenase family
Shewanella oneidensis MR-1 SO_2536 -157 5.9 ATTTAAACAATTGTTTGAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp W3-18-1 Sputw3181_2234 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp ANA-3 Shewana3_2323 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp MR-4 Shewmr4_2146 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp MR-7 Shewmr7_2223 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella baltica OS155 Sbal_2306 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella denitrificans OS217 Sden_1764 -150 5.7 TTTTAAACAATTGTTTGAAA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -150 5.9 ATTTAAACAATTGTTTGAAA
Shewanella amazonensis SB2B Sama_1870 -149 5.9 ATTTAAACATTTGTTTGAAA
Shewanella loihica PV-4 Shew_2108 -155 5.5 AGTTAAACAATTGTTTGAAA
Shewanella pealeana ATCC 700345 Spea_2393 -154 5.7 AATTAAACATTTGTTTGAAA
-121 4.8 AAATTAACGAACGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_1890 -154 6 ATTTAAACATTTGTTTAATT
Shewanella piezotolerans WP3 swp_2312 -181 5.9 ATTTAAACATTTGTTTGAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -156 5.6 TTTTAAACGTTTGTTTGAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -158 5.8 ATTTAAACGTTTGTTTTAAA
Position: -104
Score: 5.9
Sequence: AATTAAACACCCGTTTAAAA
Locus tag: IL1748
IL1748 -104 5.9 AATTAAACACCCGTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: NADP-dependent 2,4-dienoyl-CoA reductase
Shewanella oneidensis MR-1 SO_2419 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella putrefaciens CN-32 Sputcn32_2077 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella sp W3-18-1 Sputw3181_1935 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella sp ANA-3 Shewana3_1965 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sp MR-4 Shewmr4_1910 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sp MR-7 Shewmr7_2068 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella baltica OS155 Sbal_2056 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella denitrificans OS217 Sden_1900 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2144 -84 5.3 TAACAAACGAGCGTTTAAAT
-31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella amazonensis SB2B Sama_1724 -18 5.5 TTTTAAAAGGGTGTTTGAAT
Shewanella loihica PV-4 Shew_1942 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_2252 -31 5.3 ATTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella halifaxensis HAW-EB4 Shal_2030 -31 5 ATTGAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella piezotolerans WP3 swp_2472 -31 5.3 ATTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sediminis HAW-EB3 Ssed_2310 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella woodyi ATCC 51908 Swoo_2300 -31 5 TTTAAATCAGTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
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