Propagation of ArgR regulog to Idiomarina loihiensis L2TR
| Source regulog: | ArgR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Idiomarina loihiensis L2TR |
| Orthologous TF(s) | IL0471 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -77
Score: 4.7 Sequence: TCTGAGTAAAAATGCAGA
Position: -40
Score: 3.7 Sequence: TATGCAATAATAGTGAAT
Locus tag: IL0611
|
||||
| IL0611 | -77 | 4.7 | TCTGAGTAAAAATGCAGA | |
| -40 | 3.7 | TATGCAATAATAGTGAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16) | ||||
| Shewanella amazonensis SB2B | Sama_0255 | -50 | 3.7 | ACTCTTTAATTATGCAAT |
| Shewanella loihica PV-4 | Shew_0201 | -53 | 4.2 | TATGCAATAATATTGAAT |
| Shewanella pealeana ATCC 700345 | Spea_0226 | -27 | 3.8 | TTTGAATATATATTTGGG |
| Shewanella halifaxensis HAW-EB4 | Shal_4094 | -122 | 3.8 | ATTGAACATATATACTCT |
| -26 | 4.5 | TTTGAATATATATTTAGG | ||
| Shewanella piezotolerans WP3 | swp_2054 | -143 | 3.4 | AATACTTAATAATTGAAC |
| -27 | 4.5 | TTTGAATATATATTTAGG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4277 | -48 | 3.5 | ACAAACTAATTATGCAAT |
| -27 | 4 | TTTGAATATATATTTTAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_0328 | -28 | 4 | TTTGAATATATATTTTAC |
|
Position: -77
Score: 3.7 Sequence: ATTCACTATTATTGCATA
Position: -40
Score: 4.7 Sequence: TCTGCATTTTTACTCAGA
Locus tag: IL0612
|
||||
| IL0612 | -77 | 3.7 | ATTCACTATTATTGCATA | |
| -40 | 4.7 | TCTGCATTTTTACTCAGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Shewanella oneidensis MR-1 | SO_0275 | -327 | 3.6 | ATTGAAATATTAAGTAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| -127 | 3.7 | AGTGAATAAAATAACAAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3717 | -192 | 4.2 | TATGAAAATAAATTAAAA |
| -57 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella sp W3-18-1 | Sputw3181_3860 | -193 | 4.2 | TATGAAAATAAATTAAAA |
| -180 | 4 | TAAAAATATATATTCACA | ||
| -57 | 4 | AGTGAATAAAATAACAAT | ||
| Shewanella sp ANA-3 | Shewana3_3905 | -357 | 3.7 | ACTGATTTTTCAGTCTTT |
| -327 | 4.4 | ACTGAGTTATTAAGCAGT | ||
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-4 | Shewmr4_3709 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-7 | Shewmr7_0236 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella baltica OS155 | Sbal_4124 | -471 | 4.2 | ATTCAATATAAATGCGAA |
| -252 | 4 | TAAAAATATATATTCACA | ||
| -130 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella denitrificans OS217 | Sden_0250 | -235 | 4.3 | AATAAATATGTATTCACA |
| -214 | 3.7 | ATTGCATAACAATTTGAT | ||
| -145 | 4.3 | ATCGAATATAAAAGCACA | ||
| Shewanella amazonensis SB2B | Sama_0256 | -241 | 3.7 | AATAGATATTCATGCATA |
| Shewanella loihica PV-4 | Shew_0202 | -249 | 3.7 | TAAAAATATCTATTCAAT |
| -228 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella pealeana ATCC 700345 | Spea_0227 | -266 | 3.8 | CCCAAATATATATTCAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4093 | -267 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella piezotolerans WP3 | swp_2055 | -266 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4276 | -256 | 4 | GTAAAATATATATTCAAA |
| -235 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0329 | -423 | 3.5 | TTTGCATTCAAAACCAAG |
| -263 | 4 | GTAAAATATATATTCAAA | ||
|
Position: -142
Score: 3.9 Sequence: GTTAAATAAACAGTCACA
Locus tag: IL1011
|
||||
| IL1011 | -142 | 3.9 | GTTAAATAAACAGTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astB | ||||
| Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23) | ||||
| Shewanella oneidensis MR-1 | SO_2706 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| -40 | 4.1 | TTTGAATAAATAATAACC | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2251 | -225 | 4 | AGTCACTTTTTAATCAAA |
| -131 | 4.2 | TATGCATTTATCGTCAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1757 | -225 | 4 | AGTCACTTTTTAATCAAA |
| -131 | 4.2 | TATGCATTTATCGTCAAA | ||
| Shewanella sp ANA-3 | Shewana3_1728 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -132 | 3.6 | TATGCATTTATCGTGAAA | ||
| -40 | 4.1 | TTTGAATAAATAATAACC | ||
| Shewanella sp MR-4 | Shewmr4_1584 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| Shewanella sp MR-7 | Shewmr7_1659 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| Shewanella baltica OS155 | Sbal_2497 | -226 | 4 | AGTCACTTTTTAATCAAA |
| -132 | 3.6 | TATGCATTTATCGTGAAA | ||
| -40 | 3.6 | TATGAACAAATAATAACT | ||
| Shewanella denitrificans OS217 | Sden_2329 | -201 | 4.7 | CTTGCATTTTTAATCACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2479 | -186 | 5 | AGTGCATTTTTAGTCATT |
| Shewanella amazonensis SB2B | Sama_1321 | -233 | 4.1 | AGTCACTTTTTAATCAAT |
| -147 | 3.6 | AAGCAATAGTTATGCAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_1534 | -137 | 5 | TGTGCATTTCAATTCAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1604 | -169 | 4.1 | ATTTCATTAATAGTCATC |
| -137 | 4.6 | TGTGCATTTTGATGCAAA | ||
| Shewanella piezotolerans WP3 | swp_1743 | -167 | 4 | ATTTCATTATTAGTCATC |
| -135 | 4.6 | TGTGCATTTTGATGCAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2842 | -354 | 4 | ATTTCATTATTAGTCATC |
| -322 | 4.3 | TGTGCATTTCGATGCAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_1802 | -236 | 4 | ATTTCATTATTAGTCATC |
| -204 | 5 | TGTGAATTTCAATGCAAA | ||
|
Position: -28
Score: 4.5 Sequence: ATTGAATAATTATTCGAG
Locus tag: IL1075
|
||||
| IL1075 | -28 | 4.5 | ATTGAATAATTATTCGAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Shewanella oneidensis MR-1 | SO_1325 | -359 | 4.5 | AAAGAATAACAATTCACT |
| -313 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1136 | -358 | 4.7 | GAAGAATAAAAATTCACT |
| -312 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp W3-18-1 | Sputw3181_3028 | -358 | 4.8 | GGAGAATAAAAATTCACT |
| -312 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp ANA-3 | Shewana3_3050 | -360 | 4.5 | ATAGAATAACAATTCATT |
| -339 | 4 | TATAAATTTTTATACATC | ||
| -314 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp MR-4 | Shewmr4_2872 | -359 | 4.5 | AAAGAATAACAATTCACT |
| -313 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sp MR-7 | Shewmr7_2954 | -359 | 4.5 | AAAGAATAACAATTCACT |
| -313 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella baltica OS155 | Sbal_1178 | -361 | 5.3 | AATGAATAATAATTCAAC |
| -315 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella denitrificans OS217 | Sden_2790 | -359 | 5.1 | AGTGAATATTTAGTCAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2951 | -358 | 5 | AATGAATATTTAATCATT |
| -312 | 4.3 | TTTAAAATAAAATTCACT | ||
| Shewanella amazonensis SB2B | Sama_0857 | -362 | 4.6 | TTTGAATAGTTAATCAAT |
| -316 | 4 | CCTGCAAAAAAAATCACT | ||
| Shewanella loihica PV-4 | Shew_1032 | -324 | 3.8 | TTTGTTAAATAATTCACT |
| -303 | 4.3 | TATGCAATAAAAATCACT | ||
| Shewanella pealeana ATCC 700345 | Spea_1013 | -354 | 4.9 | AATGCATAAATAGTCACA |
| -330 | 4.3 | AGTGATTATCATTTCACT | ||
| -309 | 4.3 | TCTGCAAAAAAAATCACT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1061 | -355 | 4.6 | TATGCATAAATAAGCAAA |
| -331 | 3.8 | AGTGACTACCATTTCACT | ||
| -310 | 4 | TCTGCAAGAAAAATCACT | ||
| Shewanella piezotolerans WP3 | swp_3803 | -355 | 4.4 | TCTGCATAATTAGTCAAG |
| -331 | 4.3 | AGTGACTATCATTTCACT | ||
| -310 | 4.3 | TTTGCAATAAAAATCACT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1126 | -301 | 4.1 | CGTGCAAAAAAAATCACT |
| -127 | 4.3 | ACTCAAATTTTATGCAAT | ||
| -62 | 3.8 | GGTGAATATCTATACTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_1221 | -349 | 4.7 | ACTGCATAAATAAGCAAA |
| -314 | 3.9 | ATTCATTATATTTGCAAT | ||
|
Position: -130
Score: 4 Sequence: TTTGAATATTTTTTAATC
Locus tag: IL1736
|
||||
| IL1736 | -130 | 4 | TTTGAATATTTTTTAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oadG | ||||
| Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1029 | -265 | 4.3 | TATCCTTATAAATTCACT |
| -154 | 4.3 | TGTGAATATTTAGTCTTT | ||
| -133 | 4 | TGTGATTTTATATGCTGC | ||
| Shewanella sp W3-18-1 | Sputw3181_3136 | -265 | 4.3 | TATCCTTATAAATTCACT |
| -154 | 4.3 | TGTGAATATTTAGTCTTT | ||
| -133 | 4 | TGTGATTTTATATGCTGC | ||
| Shewanella sp MR-7 | Shewmr7_3069 | -322 | 3.9 | ATTCAATTTAAAGGCCAT |
| -176 | 3.7 | AACGAATGTTCATTTAAT | ||
| Shewanella baltica OS155 | Sbal_1024 | -139 | 4.9 | TGTGATTTTTTATTCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1065 | -182 | 3.8 | GTTGAATAATCGTTGAGT |
| -165 | 4.6 | TTTGAATATTTATGCTTT | ||
| Shewanella amazonensis SB2B | Sama_1051 | -352 | 4.1 | ACTGCATATACTTCCACT |
| -307 | 3.6 | TCTGCCCATGAATGCAGT | ||
| Shewanella loihica PV-4 | Shew_1219 | -377 | 4.3 | ATTGCATAATCTTGCATA |
| -331 | 4 | ATTCAATTTTCAAGCAGA | ||
| Shewanella pealeana ATCC 700345 | Spea_1198 | -73 | 4.2 | TGTGAATGAATAGTGAAT |
| -62 | 4.1 | AGTGAATATTTATTTTTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1235 | -63 | 4.8 | GGTGAATATTTATTGAGT |
| -43 | 4.1 | CATCCATGTTTATTCACA | ||
| Shewanella piezotolerans WP3 | swp_1378 | -157 | 3.6 | TATCAACAGAAATGCATA |
| -136 | 4.4 | TGTGAATAAATAGTGATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1320 | -322 | 4.4 | ACTGCATAACTTTTCATT |
| Shewanella woodyi ATCC 51908 | Swoo_3337 | -110 | 4.4 | AATGAATAAAAAGTTATT |