Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Moritella sp. PE36

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Moritella sp. PE36
Orthologous TF(s) PE36_11377
Regulated genes 12
Built upon 541 sites [see more]
Predicted regulatory interactions in Moritella sp. PE36
Locus tag Position Score Sequence
Position: -78
Score: 4.4
Sequence: CTGATCAAGATCAA
Locus tag: PE36_12497
PE36_12497 -78 4.4 CTGATCAAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaB
Ortholog function: Molybdenum cofactor biosynthesis protein MoaB
Shewanella amazonensis SB2B Sama_3525 -145 4.6 ATGATCCAGACCAA
Shewanella loihica PV-4 Shew_0088 -154 4.2 TTGATCTTAAACAA
Shewanella sediminis HAW-EB3 Ssed_4401 -186 4.9 TTGATCTTGAGCAA
Shewanella woodyi ATCC 51908 Swoo_4792 -187 4.6 TTGATCCTGAGCAA
Position: -91
Score: 4.4
Sequence: TTGATTCATATCAA
Locus tag: PE36_18239
PE36_18239 -91 4.4 TTGATTCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase, flavoprotein subunit
Shewanella baltica OS155 Sbal_3750 -79 4.3 TTAATCTGGATCTA
Shewanella frigidimarina NCIMB 400 Sfri_0679 -31 4.5 ATTATCTAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_3897 -134 3.9 GTGATCTACGTCTA
Shewanella loihica PV-4 Shew_0334 -122 3.9 GTGATCGACGTCAA
Shewanella pealeana ATCC 700345 Spea_0394 -134 4.4 GTGATCTTGATCTA
Shewanella piezotolerans WP3 swp_0430 -134 4.1 GTGATCTTGCTCTA
Shewanella sediminis HAW-EB3 Ssed_4114 -100 4.3 TTGATCTGCCTCAC
Shewanella woodyi ATCC 51908 Swoo_0509 -134 4.4 GTGATGTGGTTCAA
Position: -46
Score: 5.3
Sequence: TTGATCTAAATCAA
Locus tag: PE36_10688
PE36_10688 -46 5.3 TTGATCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Nitric oxide dioxygenase (EC 1.14.12.17)
Shewanella baltica OS155 Sbal_1014 -68 4.2 TTGATCCAAATTAA
Shewanella frigidimarina NCIMB 400 Sfri_3699 -143 5 TTGATCTAGGTCAA
Shewanella sp ANA-3 Shewana3_3174 -68 5 TTGATCCAAATCAA
Shewanella sp MR-4 Shewmr4_2996 -68 5 TTGATCCAAATCAA
Shewanella sp MR-7 Shewmr7_3077 -68 5 TTGATCCAAATCAA
Position: 34
Score: 5.2
Sequence: TTGATATGGATCAA
Locus tag: PE36_21995
PE36_21995 34 5.2 TTGATATGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella amazonensis SB2B Sama_1371 -105 5.2 TTGATTTGGATCAA
Shewanella baltica OS155 Sbal_1490 -103 5.2 TTGATTTGGATCAA
Shewanella denitrificans OS217 Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -166 4.6 GTGATCCAAATCAA
-105 5.3 TTGATCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_2887 -107 4.4 TTGATTCAGGTCAA
Shewanella oneidensis MR-1 SO1673 -293 4.3 TTGATGTAAATGAA
-106 5.2 TTGATTTGGATCAA
Shewanella pealeana ATCC 700345 Spea_2787 -155 4.3 GTGATCTAGATCCT
-104 5.3 TTGATTTAGATCAA
Shewanella piezotolerans WP3 swp_3395 -107 5.6 TTGATCTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1392 -103 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_1469 -154 3.8 GTGAGCTTGGTCAT
-104 5.6 TTGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_2775 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-4 Shewmr4_2601 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-7 Shewmr7_2668 -103 5.2 TTGATTTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2709 -103 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3207 -154 4.1 GTGAGTTCGATCAA
-104 5.2 TTGATTTGGATCAA
Position: -210
Score: 5.3
Sequence: TTGATCTAAATCAA
Locus tag: PE36_11427
PE36_11427 -210 5.3 TTGATCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_1791 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2201 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4487 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1851 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2010 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2197 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1985 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2364 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2214 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2572 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1959 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2211 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2107 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2006 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1969 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2046 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2425 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Position: -127
Score: 4.7
Sequence: TTGATCAAAATCAA
Locus tag: PE36_17942
PE36_17942 -127 4.7 TTGATCAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella amazonensis SB2B Sama_1275 -114 4.6 ATGATCCATATCAA
Shewanella baltica OS155 Sbal_1665 -122 5.2 ATGATCTGGATCAT
Shewanella denitrificans OS217 Sden_1419 -166 5.5 ATGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2443 -106 5.4 ATGATCTGGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2692 -123 5.4 ATGATCTGGATCAA
Shewanella loihica PV-4 Shew_2449 -122 5.4 ATGATCTGGATCAA
Shewanella oneidensis MR-1 SO2834 -269 4 TTGATTTTAAGCAT
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345 Spea_2619 -123 5.4 ATGATCTGGATCAA
Shewanella piezotolerans WP3 swp_3165 -122 5.4 ATGATCTGGATCAA
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32 Sputcn32_1540 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3 Ssed_1600 -122 5 ATGATCGAGATCAA
Shewanella sp ANA-3 Shewana3_2603 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-4 Shewmr4_2441 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-7 Shewmr7_2511 -121 5.2 ATGATCTGGATCAT
Shewanella sp W3-18-1 Sputw3181_2559 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908 Swoo_3049 -122 4.8 ATGATCAGGATCAA