Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Psychromonas sp. CNPT3

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Psychromonas sp. CNPT3
Orthologous TF(s) PCNPT3_10358
Regulated genes 6
Built upon 541 sites [see more]
Predicted regulatory interactions in Psychromonas sp. CNPT3
Locus tag Position Score Sequence
Position: -130
Score: 4.2
Sequence: TTGATTTAAAACAA
Locus tag: PCNPT3_03111
PCNPT3_03111 -130 4.2 TTGATTTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase, flavoprotein subunit
Shewanella baltica OS155 Sbal_3750 -79 4.3 TTAATCTGGATCTA
Shewanella frigidimarina NCIMB 400 Sfri_0679 -31 4.5 ATTATCTAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_3897 -134 3.9 GTGATCTACGTCTA
Shewanella loihica PV-4 Shew_0334 -122 3.9 GTGATCGACGTCAA
Shewanella pealeana ATCC 700345 Spea_0394 -134 4.4 GTGATCTTGATCTA
Shewanella piezotolerans WP3 swp_0430 -134 4.1 GTGATCTTGCTCTA
Shewanella sediminis HAW-EB3 Ssed_4114 -100 4.3 TTGATCTGCCTCAC
Shewanella woodyi ATCC 51908 Swoo_0509 -134 4.4 GTGATGTGGTTCAA
Position: -118
Score: 4.4
Sequence: AGGATCCAGATCAA
Locus tag: PCNPT3_02250
PCNPT3_02250 -118 4.4 AGGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella amazonensis SB2B Sama_0895 -109 4.5 ATGATCTGCTTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -121 4.5 GTGATGTGGCTCAT
Shewanella loihica PV-4 Shew_1069 -121 4.1 TTGATCCGCTTCAT
Shewanella sediminis HAW-EB3 Ssed_1165 -120 4.4 TTGATCTACTTCAT
Shewanella woodyi ATCC 51908 Swoo_1260 -121 4.7 TTGATCTGTCTCAA
Position: -86
Score: 4.8
Sequence: TTGATATGCATCAA
Locus tag: PCNPT3_10895
PCNPT3_10895 -86 4.8 TTGATATGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella amazonensis SB2B Sama_1275 -114 4.6 ATGATCCATATCAA
Shewanella baltica OS155 Sbal_1665 -122 5.2 ATGATCTGGATCAT
Shewanella denitrificans OS217 Sden_1419 -166 5.5 ATGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2443 -106 5.4 ATGATCTGGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2692 -123 5.4 ATGATCTGGATCAA
Shewanella loihica PV-4 Shew_2449 -122 5.4 ATGATCTGGATCAA
Shewanella oneidensis MR-1 SO2834 -269 4 TTGATTTTAAGCAT
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345 Spea_2619 -123 5.4 ATGATCTGGATCAA
Shewanella piezotolerans WP3 swp_3165 -122 5.4 ATGATCTGGATCAA
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32 Sputcn32_1540 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3 Ssed_1600 -122 5 ATGATCGAGATCAA
Shewanella sp ANA-3 Shewana3_2603 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-4 Shewmr4_2441 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-7 Shewmr7_2511 -121 5.2 ATGATCTGGATCAT
Shewanella sp W3-18-1 Sputw3181_2559 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908 Swoo_3049 -122 4.8 ATGATCAGGATCAA