Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Psychromonas sp. CNPT3

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Psychromonas sp. CNPT3
Orthologous TF(s) PCNPT3_03561
Regulated genes 7
Built upon 502 sites [see more]
Predicted regulatory interactions in Psychromonas sp. CNPT3
Locus tag Position Score Sequence
Position: -141
Score: 5.2
Sequence: AGTGCATATTTATGCAGA
Locus tag: PCNPT3_05594
PCNPT3_05594 -141 5.2 AGTGCATATTTATGCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argW
Ortholog function: Predicted arginine uptake transporter, COG3314 family
Shewanella oneidensis MR-1 SO_1245 -99 4.8 GTTGAATGAAAATGCAGC
Shewanella putrefaciens CN-32 Sputcn32_2808 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp W3-18-1 Sputw3181_1204 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp ANA-3 Shewana3_1062 -99 4.9 GTTGAATGAAAATGCACC
Shewanella sp MR-4 Shewmr4_1058 -98 4.8 GTTGAATGAAAATGCATC
Shewanella sp MR-7 Shewmr7_1129 -98 4.8 GTTGAATGAAAATGCATC
Shewanella baltica OS155 Sbal_3205 -99 5.2 GTTGAATTTAAATGCACC
Shewanella denitrificans OS217 Sden_1037 -98 4.1 ACTCTATTTTTATGCAGC
Shewanella frigidimarina NCIMB 400 Sfri_1012 -88 4.8 ACTGAATGGACATTCAAT
Shewanella amazonensis SB2B Sama_0994 -102 4.2 CCTGCATGGACATGCACT
Shewanella loihica PV-4 Shew_2790 -90 4.5 CATGAATGGATATTCAGA
Shewanella pealeana ATCC 700345 Spea_3024 -93 4.9 GTTGAATGGATATTCAAT
Shewanella halifaxensis HAW-EB4 Shal_3114 -91 4.9 GTTGAATGGATATTCAAT
Shewanella piezotolerans WP3 swp_1256 -90 5.2 GTTGAATGAATATTCAAT
Shewanella sediminis HAW-EB3 Ssed_3353 -58 4.8 TTTGAATGGATATTCATA
Shewanella woodyi ATCC 51908 Swoo_3520 -89 4.6 CATGAATGGATATTCAGT
Position: -339
Score: 4.4
Sequence: TGTAAATAGTTATTCATT
Position: -93
Score: 5
Sequence: TTTGCATGTTTATGCAGT
Locus tag: PCNPT3_02720
PCNPT3_02720 -339 4.4 TGTAAATAGTTATTCATT
-93 5 TTTGCATGTTTATGCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Shewanella oneidensis MR-1 SO_0278 -60 4.9 AGTGCATAAAGATTCACT
Shewanella putrefaciens CN-32 Sputcn32_3714 -60 4.9 AATGCATAAAGATTCATT
Shewanella sp W3-18-1 Sputw3181_3857 -60 4.9 AATGCATAAAGATTCATT
Shewanella sp ANA-3 Shewana3_3902 -60 4.9 AATGCATAAAGATTCACT
Shewanella sp MR-4 Shewmr4_3706 -60 4.9 AATGCATAAAGATTCACT
Shewanella sp MR-7 Shewmr7_0239 -60 4.9 AATGCATAAAGATTCACT
Shewanella baltica OS155 Sbal_4121 -60 4.9 AATGCATAAAGATTCATT
Shewanella denitrificans OS217 Sden_0253 -53 4.9 AGTGCATAAAGATTCATT
Shewanella frigidimarina NCIMB 400 Sfri_0194 -59 4.9 AGTGCATTAAAATCCATT
Shewanella amazonensis SB2B Sama_0259 -44 5.4 AATGCATAAAAATTCATT
Shewanella loihica PV-4 Shew_0205 -57 4.9 AATGCATAAAGATTCATT
Shewanella pealeana ATCC 700345 Spea_0230 -56 4.9 AGTGCATAAAGATTCACT
Shewanella halifaxensis HAW-EB4 Shal_4090 -53 4.9 AGTGCATAAAGATTCATT
Shewanella piezotolerans WP3 swp_2058 -55 4.9 AATGCATAAAGATTCATT
Shewanella sediminis HAW-EB3 Ssed_4273 -51 4.4 AATGCATAAGGATTCACT
Shewanella woodyi ATCC 51908 Swoo_0332 -51 4.9 AGTGCATAAAGATTCATT
Position: -103
Score: 4.7
Sequence: ATTGAATAAAAATGCCAA
Locus tag: PCNPT3_09134
PCNPT3_09134 -103 4.7 ATTGAATAAAAATGCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Shewanella oneidensis MR-1 SO_4345 -216 4.2 CGTGATTATTAAATCACA
Shewanella putrefaciens CN-32 Sputcn32_3612 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp W3-18-1 Sputw3181_3752 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp ANA-3 Shewana3_0358 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-4 Shewmr4_0364 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-7 Shewmr7_3662 -219 4.5 AGTGATTATTAAATCACA
Shewanella denitrificans OS217 Sden_3412 -153 4.6 AGTGATTATTAAGTCACA
Shewanella frigidimarina NCIMB 400 Sfri_0424 -202 4.6 AGTGATTATTAAGTCACA
Shewanella amazonensis SB2B Sama_3279 -157 4.5 AGTGATTATTAAATCACA
Shewanella loihica PV-4 Shew_0292 -166 4.5 AGTGATTATTAAATCACA
Shewanella pealeana ATCC 700345 Spea_0348 -181 4.2 CGTGATTATTAAATCACA
Shewanella halifaxensis HAW-EB4 Shal_3941 -193 4.2 CGTGATTATTAAATCACA
Shewanella piezotolerans WP3 swp_0362 -189 4.2 CGTGATTATTAAATCACA
Shewanella woodyi ATCC 51908 Swoo_0445 -190 4.2 CGTGATTATTAAATCACA