Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Saccharophagus degradans 2-40

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Saccharophagus degradans 2-40
Orthologous TF(s) Sde_0755
Regulated genes 30
Built upon 2713 sites [see more]
Predicted regulatory interactions in Saccharophagus degradans 2-40
Locus tag Position Score Sequence
Position: -333
Score: 3.5
Sequence: AAAAGTAACATAATACACCAAT
Position: -200
Score: 3.6
Sequence: AAGTGTGTGCTACTTCAATATA
Locus tag: Sde_0755
Sde_0755 -333 3.5 AAAAGTAACATAATACACCAAT
-200 3.6 AAGTGTGTGCTACTTCAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1 SO0624 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32 Sputcn32_0652 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1 Sputw3181_3522 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3 Shewana3_0617 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4 Shewmr4_0618 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7 Shewmr7_3412 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155 Sbal_0578 -174 3.7 TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217 Sden_3190 -94 3.6 AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400 Sfri_3292 -97 4 AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B Sama_3004 -96 3.8 AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4 Shew_0585 -238 4 AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345 Spea_3509 -225 3.6 AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4 Shal_3603 -226 3.5 AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3 swp_0755 -309 4.2 TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_3873 -173 3.8 TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908 Swoo_0662 -173 3.8 TTAGTTGACTTATATCACTAAT
Position: -207
Score: 3.7
Sequence: TTTTGTTGTAAATATAACACTT
Locus tag: Sde_0992
Sde_0992 -207 3.7 TTTTGTTGTAAATATAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: -179
Score: 4.8
Sequence: ATTTGCGACCTGTCTCACAAAT
Locus tag: Sde_1188
Sde_1188 -179 4.8 ATTTGCGACCTGTCTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_1245
Ortholog function: transcriptional regulator, MarR family
Shewanella putrefaciens CN-32 Sputcn32_1245 -263 4.5 ATTTGTGACACAGATCGAATTG
-234 3.8 ATTTGTAAGTGATTTCCCACTA
Shewanella putrefaciens CN-32 Sputcn32_1245 -263 4.5 ATTTGTGACACAGATCGAATTG
-234 3.8 ATTTGTAAGTGATTTCCCACTA
Shewanella sp W3-18-1 Sputw3181_2859 -263 4.5 ATTTGTGACGCAGATCGAATTG
-234 3.8 ATTTGTAAGTGATTTCCCACTA
Shewanella sp W3-18-1 Sputw3181_2859 -263 4.5 ATTTGTGACGCAGATCGAATTG
-234 3.8 ATTTGTAAGTGATTTCCCACTA
Shewanella sp ANA-3 Shewana3_2937 -234 4.3 AGATGTGATCTAGATCGGCTTA
Shewanella sp ANA-3 Shewana3_2937 -234 4.3 AGATGTGATCTAGATCGGCTTA
Shewanella sp MR-4 Shewmr4_2761 -234 4.3 AGATGTGATCTAGATCGGCTTA
Shewanella sp MR-4 Shewmr4_2761 -234 4.3 AGATGTGATCTAGATCGGCTTA
Shewanella sp MR-7 Shewmr7_2839 -255 4.3 AGATGTGATCTAGATCGGCTTA
Shewanella sp MR-7 Shewmr7_2839 -255 4.3 AGATGTGATCTAGATCGGCTTA
Shewanella frigidimarina NCIMB 400 Sfri_1943 -111 4.9 TGTTGTGATCTATATCAAGTTA
Shewanella pealeana ATCC 700345 Spea_1004 -164 4.1 ATGCGTGAGGTGAGTCACGCTT
-135 3.7 AAGCTTGATCGTTATAACCCTA
Shewanella halifaxensis HAW-EB4 Shal_1054 -163 4.3 ATCTGTGAACCTTGTCGCATTT
Shewanella piezotolerans WP3 swp_3815 -141 4.7 TTCTGTGATTCAGGTCGCAAAT
Position: 5
Score: 3.6
Sequence: TAATATGAGAACCATTACATTC
Locus tag: Sde_2108
Sde_2108 5 3.6 TAATATGAGAACCATTACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhA
Ortholog function: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Shewanella putrefaciens CN-32 Sputcn32_2271 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1737 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2517 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2185 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2345 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1425 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1786 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2491 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2952 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2816 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1835 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -37
Score: 3.7
Sequence: TTTTTTGAGCTTAGTAAGATAA
Locus tag: Sde_3160
Sde_3160 -37 3.7 TTTTTTGAGCTTAGTAAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sspA
Ortholog function: stringent starvation protein A
Shewanella oneidensis MR-1 SO0611 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3273 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0668 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0604 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0605 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3425 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0565 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3304 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0573 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345 Spea_3533 -78 4.2 AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4 Shal_3627 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0796 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0804 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4163 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -197
Score: 4
Sequence: ATTTGTGAGTCGAATATAATAA
Locus tag: Sde_3162
Sde_3162 -197 4 ATTTGTGAGTCGAATATAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1 SO0608 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3276 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0665 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0601 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0602 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3428 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0562 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3307 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0570 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345 Spea_3536 -78 4.2 AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4 Shal_3630 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0793 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0801 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4166 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -53
Score: 3.9
Sequence: ATATATGATTCTGGTCGCGGAT
Locus tag: Sde_3257
Sde_3257 -53 3.9 ATATATGATTCTGGTCGCGGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rplY
Ortholog function: LSU ribosomal protein L25p
Shewanella oneidensis MR-1 SO2112 -95 4.4 AAGTGTGATCAAGATCACGTGT
Shewanella putrefaciens CN-32 Sputcn32_1895 -245 4.4 AAATGTGATCTAGATCTCGTGT
Shewanella sp W3-18-1 Sputw3181_2113 -245 4.4 AAATGTGATCTAGATCTCGTGT
Shewanella sp ANA-3 Shewana3_1892 -234 3.8 TTTTTTGATTCAGATCAAAGCC
Shewanella sp MR-4 Shewmr4_1834 -255 4.1 AAGTGTGATCAAGATCGCGTGT
-234 4.3 TTTTTTGATTCAGATCAAAGAC
Shewanella sp MR-7 Shewmr7_2143 -255 4.1 AAGTGTGATCAAGATCGCGTGT
-234 4.3 TTTTTTGATTCAGATCAAAGAC
Shewanella baltica OS155 Sbal_1901 -247 4 CAGTGTGATCTAGATCGCGTGT
Shewanella amazonensis SB2B Sama_1614 -233 3.9 AAATGTGAACAAGATCACAGGC
Position: -81
Score: 4.5
Sequence: AAATGCGAGGCATTTCACCTTT
Position: 21
Score: 4
Sequence: TTACGTGAGAACGTTCGCATAC
Locus tag: Sde_3380
Sde_3380 -81 4.5 AAATGCGAGGCATTTCACCTTT
21 4 TTACGTGAGAACGTTCGCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewanella sp ANA-3 Shewana3_3906 -233 3.7 AATATTGCGTTAGCTCGCATTT
-189 3.7 TATCGCGATTAGTTGCATATAA
Shewanella sp MR-4 Shewmr4_3710 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella sp MR-7 Shewmr7_0235 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella loihica PV-4 Shew_0200 -107 4.3 CAAGGTGATATAGAACACATAA
Shewanella halifaxensis HAW-EB4 Shal_4095 -106 5 AAAAGTGATATAGAGCACATTA
Shewanella piezotolerans WP3 swp_2053 -106 4.4 TAAAGTGAGGTAGAGCACATTC
Shewanella sediminis HAW-EB3 Ssed_4278 -111 3.9 CCGAGTGATGTAGAGCACATAA
Shewanella woodyi ATCC 51908 Swoo_0327 -111 4.7 AGAAGTGATGTAGAACACATAA
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