Propagation of Fur regulog to Saccharophagus degradans 2-40
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Saccharophagus degradans 2-40 |
| Orthologous TF(s) | Sde_2736 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -75
Score: 4.7 Sequence: TATTGAAAAGTATTAGCAAAT
Locus tag: Sde_1739
|
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| Sde_1739 | -75 | 4.7 | TATTGAAAAGTATTAGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yceI | ||||
| Ortholog function: Protein yceI precursor | ||||
| Shewanella oneidensis MR-1 | SO3370 | -59 | 4.7 | TTATGATAATGAACATTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2702 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1309 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp ANA-3 | Shewana3_1179 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-4 | Shewmr4_1178 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-7 | Shewmr7_1249 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella baltica OS155 | Sbal_3041 | -61 | 5.3 | TTATGATAATGAATATTATTT |
| Shewanella amazonensis SB2B | Sama_0950 | -38 | 5.4 | AGATGAAAACCATTCTCGTTA |
|
Position: -108
Score: 5.3 Sequence: CATTGATAACTCTTATCATTT
Locus tag: Sde_2437
|
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| Sde_2437 | -108 | 5.3 | CATTGATAACTCTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_4035 | ||||
| Ortholog function: Conserved hypothetical signal peptide protein, possibly porin | ||||
| Shewanella baltica OS155 | Sbal_2014 | -93 | 5.4 | AAATGCGAATTGTTTGCATTA |
| Shewanella denitrificans OS217 | Sden_0638 | -91 | 5.1 | AAATACGAATAGTTTGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4035 | -106 | 5.6 | TAATGATAATGGTTTGCATTA |
| Shewanella amazonensis SB2B | Sama_0589 | -84 | 5.1 | CAATGCGAATCGTTTGCATTT |
| Shewanella loihica PV-4 | Shew_3120 | -84 | 5.7 | TAATGATAATAGTTTGCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0712 | -82 | 5.6 | TAATGATAACGATTTGCATTA |
| Shewanella piezotolerans WP3 | swp_4367 | -81 | 6 | AAATGAGAATAATTTGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3889 | -83 | 5.6 | AAATGATAACCGTTTGCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3788 | -83 | 5.4 | GAATGATAACAATTTGCATTA |
|
Position: -78
Score: 5.5 Sequence: AAATGATAATGATTTGCATGT
Locus tag: Sde_2885
|
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| Sde_2885 | -78 | 5.5 | AAATGATAATGATTTGCATGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4423.1 | ||||
| Ortholog function: TonB-dependent ferric achromobactin receptor | ||||
| Shewanella oneidensis MR-1 | SO4423.1 | -98 | 5.4 | TAATAAAAATCGTTACCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0401 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0255 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp ANA-3 | Shewana3_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella baltica OS155 | Sbal_0298 | -100 | 5.6 | GAATAAAAATCGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA |
| Shewanella amazonensis SB2B | Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA |
| Shewanella loihica PV-4 | Shew_1688 | -72 | 4.9 | ATATGATAATCTATATCATTC |
| Shewanella pealeana ATCC 700345 | Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_1134 | -108 | 5.2 | CAACAATAATCATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1496 | -51 | 4.9 | AATCGAGAATGGTTATCATCC |
| Shewanella woodyi ATCC 51908 | Swoo_0587 | -62 | 5.9 | TAATGGGAATAATTATCATTT |