Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PsrA regulog to Saccharophagus degradans 2-40

Reference regulog properties
Source regulog: PsrA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Saccharophagus degradans 2-40
Orthologous TF(s) Sde_1789
Regulated genes 1
Built upon 295 sites [see more]
Predicted regulatory interactions in Saccharophagus degradans 2-40
Locus tag Position Score Sequence
Position: -90
Score: 6.1
Sequence: ATTCAAACAAGCGTTTGAAT
Locus tag: Sde_1605
Sde_1605 -90 6.1 ATTCAAACAAGCGTTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: fatty oxidation complex, alpha subunit
Shewanella oneidensis MR-1 SO_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp W3-18-1 Sputw3181_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp ANA-3 Shewana3_0024 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-4 Shewmr4_0018 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-7 Shewmr7_0016 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella baltica OS155 Sbal_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella denitrificans OS217 Sden_0015 -149 6.1 AATTAAACGGCCGTTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0013 -161 6.1 AATTAAACGGCCGTTTAAAT
Shewanella amazonensis SB2B Sama_0032 -145 5.9 AATTAAACGATCGTTTTAAT
Shewanella loihica PV-4 Shew_0019 -161 6.1 AATTAAACAAGTGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_0018 -168 5.6 AACTAAACGGTCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_0016 -168 5.5 AACCAAACGACCGTTTAAAT
Shewanella piezotolerans WP3 swp_0035 -161 5.5 ATTCGAACACTCGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_0023 -228 6.1 AATCAAACACCCGTTTAAAT
Shewanella woodyi ATCC 51908 Swoo_0021 -166 6.1 AATCAAACAAGTGTTTAAAT
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