Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ArgR regulog to Saccharophagus degradans 2-40

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Saccharophagus degradans 2-40
Orthologous TF(s) No orthologous TFs found
Regulated genes 4
Built upon 502 sites [see more]
Predicted regulatory interactions in Saccharophagus degradans 2-40
Locus tag Position Score Sequence
Position: -120
Score: 3.7
Sequence: TTAGGGTTTTTATTCAGT
Locus tag: Sde_0363
Sde_0363 -120 3.7 TTAGGGTTTTTATTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16)
Shewanella amazonensis SB2B Sama_0255 -50 3.7 ACTCTTTAATTATGCAAT
Shewanella loihica PV-4 Shew_0201 -53 4.2 TATGCAATAATATTGAAT
Shewanella pealeana ATCC 700345 Spea_0226 -27 3.8 TTTGAATATATATTTGGG
Shewanella halifaxensis HAW-EB4 Shal_4094 -122 3.8 ATTGAACATATATACTCT
-26 4.5 TTTGAATATATATTTAGG
Shewanella piezotolerans WP3 swp_2054 -143 3.4 AATACTTAATAATTGAAC
-27 4.5 TTTGAATATATATTTAGG
Shewanella sediminis HAW-EB3 Ssed_4277 -48 3.5 ACAAACTAATTATGCAAT
-27 4 TTTGAATATATATTTTAC
Shewanella woodyi ATCC 51908 Swoo_0328 -28 4 TTTGAATATATATTTTAC
Position: -42
Score: 3.7
Sequence: ACTGTATAAATAACCATA
Locus tag: Sde_2735
Sde_2735 -42 3.7 ACTGTATAAATAACCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella putrefaciens CN-32 Sputcn32_2771 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp W3-18-1 Sputw3181_1241 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp ANA-3 Shewana3_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-4 Shewmr4_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-7 Shewmr7_1170 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella baltica OS155 Sbal_3153 -137 3.6 CATGCATAATCAGTTAAT
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella denitrificans OS217 Sden_1151 -95 3.7 ACTCAAAATTAACTCAGC
-70 3.9 ACTGTATAAAAAACCAGT
-48 3.7 ACTGTTTATCAATACAGT
Shewanella frigidimarina NCIMB 400 Sfri_1043 -112 3.6 GATGATAAAATAGTCAAC
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella amazonensis SB2B Sama_1026 -72 3.8 ACTGTACAAAAAATCAGT
-50 3.7 ACTGTGTATCAATACAGT
Shewanella loihica PV-4 Shew_1196 -61 5.1 ACTGTATAAAAATTCAGT
Shewanella sediminis HAW-EB3 Ssed_1281 -61 4.6 ACTGTATATAAAATCAGT
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