Propagation of ArgR regulog to Saccharophagus degradans 2-40
| Source regulog: | ArgR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Saccharophagus degradans 2-40 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -120
Score: 3.7 Sequence: TTAGGGTTTTTATTCAGT
Locus tag: Sde_0363
|
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| Sde_0363 | -120 | 3.7 | TTAGGGTTTTTATTCAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16) | ||||
| Shewanella amazonensis SB2B | Sama_0255 | -50 | 3.7 | ACTCTTTAATTATGCAAT |
| Shewanella loihica PV-4 | Shew_0201 | -53 | 4.2 | TATGCAATAATATTGAAT |
| Shewanella pealeana ATCC 700345 | Spea_0226 | -27 | 3.8 | TTTGAATATATATTTGGG |
| Shewanella halifaxensis HAW-EB4 | Shal_4094 | -122 | 3.8 | ATTGAACATATATACTCT |
| -26 | 4.5 | TTTGAATATATATTTAGG | ||
| Shewanella piezotolerans WP3 | swp_2054 | -143 | 3.4 | AATACTTAATAATTGAAC |
| -27 | 4.5 | TTTGAATATATATTTAGG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4277 | -48 | 3.5 | ACAAACTAATTATGCAAT |
| -27 | 4 | TTTGAATATATATTTTAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_0328 | -28 | 4 | TTTGAATATATATTTTAC |
|
Position: -42
Score: 3.7 Sequence: ACTGTATAAATAACCATA
Locus tag: Sde_2735
|
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| Sde_2735 | -42 | 3.7 | ACTGTATAAATAACCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recN | ||||
| Ortholog function: DNA repair protein RecN | ||||
| Shewanella oneidensis MR-1 | SO_3462 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2771 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_1241 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp ANA-3 | Shewana3_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp MR-4 | Shewmr4_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp MR-7 | Shewmr7_1170 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella baltica OS155 | Sbal_3153 | -137 | 3.6 | CATGCATAATCAGTTAAT |
| -71 | 4.6 | ACTGTATATAAAATCAGT | ||
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella denitrificans OS217 | Sden_1151 | -95 | 3.7 | ACTCAAAATTAACTCAGC |
| -70 | 3.9 | ACTGTATAAAAAACCAGT | ||
| -48 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1043 | -112 | 3.6 | GATGATAAAATAGTCAAC |
| -71 | 4.6 | ACTGTATATAAAATCAGT | ||
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella amazonensis SB2B | Sama_1026 | -72 | 3.8 | ACTGTACAAAAAATCAGT |
| -50 | 3.7 | ACTGTGTATCAATACAGT | ||
| Shewanella loihica PV-4 | Shew_1196 | -61 | 5.1 | ACTGTATAAAAATTCAGT |
| Shewanella sediminis HAW-EB3 | Ssed_1281 | -61 | 4.6 | ACTGTATATAAAATCAGT |