Propagation of Fur regulog to Alteromonadales bacterium TW-7
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Alteromonadales bacterium TW-7 |
| Orthologous TF(s) | ATW7_13293 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -109
Score: 4.4 Sequence: AAATAAGAATCAAAACCAATA
Locus tag: ATW7_02497
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| ATW7_02497 | -109 | 4.4 | AAATAAGAATCAAAACCAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr1 | ||||
| Ortholog function: Bacterioferritin subunit 1 | ||||
| Shewanella oneidensis MR-1 | SO1112 | -125 | 5.2 | TAATGAGAATGCTTTTAATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0949 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp W3-18-1 | Sputw3181_3227 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp ANA-3 | Shewana3_0947 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-4 | Shewmr4_0945 | -124 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-7 | Shewmr7_0983 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella baltica OS155 | Sbal_0933 | -126 | 5.3 | AAATGAGAATGGTTGTTATCA |
| Shewanella denitrificans OS217 | Sden_0991 | -120 | 5.6 | TAATGATAATGGTTATCACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0958 | -121 | 6 | TAATGATAATAGTTATCAATT |
| Shewanella amazonensis SB2B | Sama_2529 | -122 | 4.7 | CAATAAGAATAATTAGCCTTT |
| Shewanella loihica PV-4 | Shew_2872 | -115 | 4.8 | GAATGAGAACGATTTTCTTTG |
| Shewanella pealeana ATCC 700345 | Spea_3094 | -116 | 5.4 | TAATGAGAATGGTTATCTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3178 | -121 | 4.3 | TAGTGATAATGAAAATCACTA |
| -88 | 4.3 | TGTTGATATTTAACCTTATTT | ||
| Shewanella piezotolerans WP3 | swp_1176 | -118 | 5.5 | TAATGATAATAATTATCTTTA |
| Shewanella sediminis HAW-EB3 | Ssed_2231 | -137 | 4.6 | TAATGGGAATGATTATCTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_3607 | -167 | 4.5 | AAATGATAATGCTTAATGTTA |
|
Position: -67
Score: 5.7 Sequence: AAATGATATTTATTTTTATTA
Locus tag: ATW7_15529
|
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| ATW7_15529 | -67 | 5.7 | AAATGATATTTATTTTTATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -116 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_4127 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-4 | Shewmr4_3922 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-7 | Shewmr7_4014 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella baltica OS155 | Sbal_4363 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -68 | 5.4 | AAATGGAAACGCTTCTCATTT |
| Shewanella amazonensis SB2B | Sama_3641 | -73 | 5.9 | AAATGCTAATCATTATCAATT |
| Shewanella loihica PV-4 | Shew_3841 | -69 | 6 | AAATAAAAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4236 | -69 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -68 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella piezotolerans WP3 | swp_5150 | -68 | 5.6 | GAATAAAAACAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4483 | -66 | 6 | AAATAAAAACGATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -67 | 6.2 | AAATAAAAATAATTCTCATTT |
|
Position: -48
Score: 5.3 Sequence: TAATGCAAATCATTATCATGT
Locus tag: ATW7_15879
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| ATW7_15879 | -48 | 5.3 | TAATGCAAATCATTATCATGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1188 | ||||
| Ortholog function: Inner membrane protein with PepSY TM helix | ||||
| Shewanella oneidensis MR-1 | SO1188 | -185 | 5.4 | TTTTGATAATAAATATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2850 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_1054 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp ANA-3 | Shewana3_1014 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-4 | Shewmr4_1010 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-7 | Shewmr7_1075 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella baltica OS155 | Sbal_3255 | -45 | 5.4 | ATTTGATAATCGATCTCATTT |
| Shewanella denitrificans OS217 | Sden_2152 | -58 | 5.8 | TATTGAGATTCATTATCATTT |
| Shewanella amazonensis SB2B | Sama_2808 | -73 | 4.8 | TGGTGAGAATTACTCTCAATT |
| Shewanella piezotolerans WP3 | swp_3069 | -102 | 4.3 | TGATCATAATTGTTTTAAATC |
|
Position: -53
Score: 5.6 Sequence: AAATAATAATCATTACCATTA
Position: -20
Score: 5.4 Sequence: AAATGCGAATGGTTATCATAA
Locus tag: ATW7_00380
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| ATW7_00380 | -53 | 5.6 | AAATAATAATCATTACCATTA | |
| -20 | 5.4 | AAATGCGAATGGTTATCATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1482 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO1482 | -49 | 5 | GGATGGAAATCATTATCATTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1237 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp W3-18-1 | Sputw3181_2867 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp ANA-3 | Shewana3_2944 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-4 | Shewmr4_2768 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-7 | Shewmr7_2846 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella baltica OS155 | Sbal_1315 | -49 | 5 | AAATGCAAATCATTACTATTC |
| Shewanella denitrificans OS217 | Sden_1445 | -48 | 5.2 | CTATGATAATCATTATCATTC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2440 | -52 | 5.6 | TTATGATAATCATTATCATTC |
| Shewanella loihica PV-4 | Shew_2690 | -51 | 6 | TATTGATAATCGTTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2930 | -51 | 6 | TAATGATAATCGTTATCATCT |
| Shewanella halifaxensis HAW-EB4 | Shal_3021 | -51 | 5.6 | TAATAAGAATCGTTATCATCT |
| Shewanella piezotolerans WP3 | swp_3568 | -51 | 5.8 | TAATGATAATGGTTATCATCA |
| Shewanella sediminis HAW-EB3 | Ssed_3242 | -49 | 5.5 | AAATGCAAATCGTTATCATTC |
| Shewanella woodyi ATCC 51908 | Swoo_3375 | -51 | 6 | TAATGATAATCGTTATCATCT |
|
Position: -54
Score: 5.5 Sequence: TAATGATAGTCGTTATCATTT
Locus tag: ATW7_09161
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| ATW7_09161 | -54 | 5.5 | TAATGATAGTCGTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_1590 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1590 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp W3-18-1 | Sputw3181_2432 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp ANA-3 | Shewana3_2551 | -99 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp MR-4 | Shewmr4_2386 | -98 | 6.2 | AAATGAGAATTATTGTCATTT |
| Shewanella sp MR-7 | Shewmr7_2458 | -98 | 5.5 | AAATGAGAATTATTGTCACCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0391 | -75 | 5.7 | AAATGAGAATAGTTTCCATTA |
|
Position: -74
Score: 4.9 Sequence: TAATAATATTGATTCGCATTC
Locus tag: ATW7_03447
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| ATW7_03447 | -74 | 4.9 | TAATAATATTGATTCGCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0590 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella sp MR-4 | Shewmr4_0630 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella sp MR-7 | Shewmr7_3399 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella amazonensis SB2B | Sama_0590 | -2 | 5.9 | AAATGATAACTATTGTCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0713 | -66 | 5.5 | AAATGATAATCAATCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0766 | -67 | 5.6 | AAATGAGAATGAATAGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3888 | -84 | 5.5 | AAATGATAACCACTCTCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3787 | -2 | 5.5 | AAATGATAATCAATCCCATTA |
|
Position: -31
Score: 5.4 Sequence: TATTGATAATAATTACTATTT
Locus tag: ATW7_12358
|
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| ATW7_12358 | -31 | 5.4 | TATTGATAATAATTACTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbpA | ||||
| Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA | ||||
| Shewanella oneidensis MR-1 | SO0744 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3227 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_0714 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp ANA-3 | Shewana3_3517 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-4 | Shewmr4_3347 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-7 | Shewmr7_0606 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella baltica OS155 | Sbal_0812 | -76 | 5.4 | AACTGATAAGCATTATCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0636 | -67 | 5.9 | AATTGATAACCATTATCAATT |
| Shewanella amazonensis SB2B | Sama_0666 | -57 | 5.8 | TAGTGATAATAATTATCATTA |
| Shewanella loihica PV-4 | Shew_0861 | -41 | 6.1 | AATTGATAATTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0844 | -60 | 5.8 | AATTGAGAATTATTATCAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0897 | -64 | 5.4 | AATTGAGAATTATTATCAGTC |
| Shewanella piezotolerans WP3 | swp_4107 | -60 | 5.2 | AATTGAGAACTATTATCAGCA |
| Shewanella sediminis HAW-EB3 | Ssed_0945 | -58 | 5.7 | GATTGATAATAATTATCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_0996 | -57 | 5.4 | AATTGATAACTATTATCATCG |