Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fur regulog to Alteromonadales bacterium TW-7

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Alteromonadales bacterium TW-7
Orthologous TF(s) ATW7_13293
Regulated genes 10
Built upon 505 sites [see more]
Predicted regulatory interactions in Alteromonadales bacterium TW-7
Locus tag Position Score Sequence
Position: -109
Score: 4.4
Sequence: AAATAAGAATCAAAACCAATA
Locus tag: ATW7_02497
ATW7_02497 -109 4.4 AAATAAGAATCAAAACCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr1
Ortholog function: Bacterioferritin subunit 1
Shewanella oneidensis MR-1 SO1112 -125 5.2 TAATGAGAATGCTTTTAATTA
Shewanella putrefaciens CN-32 Sputcn32_0949 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp W3-18-1 Sputw3181_3227 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp ANA-3 Shewana3_0947 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-4 Shewmr4_0945 -124 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-7 Shewmr7_0983 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella baltica OS155 Sbal_0933 -126 5.3 AAATGAGAATGGTTGTTATCA
Shewanella denitrificans OS217 Sden_0991 -120 5.6 TAATGATAATGGTTATCACTA
Shewanella frigidimarina NCIMB 400 Sfri_0958 -121 6 TAATGATAATAGTTATCAATT
Shewanella amazonensis SB2B Sama_2529 -122 4.7 CAATAAGAATAATTAGCCTTT
Shewanella loihica PV-4 Shew_2872 -115 4.8 GAATGAGAACGATTTTCTTTG
Shewanella pealeana ATCC 700345 Spea_3094 -116 5.4 TAATGAGAATGGTTATCTTTA
Shewanella halifaxensis HAW-EB4 Shal_3178 -121 4.3 TAGTGATAATGAAAATCACTA
-88 4.3 TGTTGATATTTAACCTTATTT
Shewanella piezotolerans WP3 swp_1176 -118 5.5 TAATGATAATAATTATCTTTA
Shewanella sediminis HAW-EB3 Ssed_2231 -137 4.6 TAATGGGAATGATTATCTCTA
Shewanella woodyi ATCC 51908 Swoo_3607 -167 4.5 AAATGATAATGCTTAATGTTA
Position: -67
Score: 5.7
Sequence: AAATGATATTTATTTTTATTA
Locus tag: ATW7_15529
ATW7_15529 -67 5.7 AAATGATATTTATTTTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: TonB-dependent siderophore receptor
Shewanella oneidensis MR-1 SO4743 -116 5.7 AAATAAAAACAATTCTTATTT
Shewanella putrefaciens CN-32 Sputcn32_3953 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_4050 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp ANA-3 Shewana3_4127 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-4 Shewmr4_3922 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-7 Shewmr7_4014 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella baltica OS155 Sbal_4363 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4042 -68 5.4 AAATGGAAACGCTTCTCATTT
Shewanella amazonensis SB2B Sama_3641 -73 5.9 AAATGCTAATCATTATCAATT
Shewanella loihica PV-4 Shew_3841 -69 6 AAATAAAAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4236 -69 6 AAATAAAAATAGTTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_4287 -68 6 AAATAAAAATAGTTCTCATTT
Shewanella piezotolerans WP3 swp_5150 -68 5.6 GAATAAAAACAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_4483 -66 6 AAATAAAAACGATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_4894 -67 6.2 AAATAAAAATAATTCTCATTT
Position: -48
Score: 5.3
Sequence: TAATGCAAATCATTATCATGT
Locus tag: ATW7_15879
ATW7_15879 -48 5.3 TAATGCAAATCATTATCATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1188
Ortholog function: Inner membrane protein with PepSY TM helix
Shewanella oneidensis MR-1 SO1188 -185 5.4 TTTTGATAATAAATATCATTT
Shewanella putrefaciens CN-32 Sputcn32_2850 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp W3-18-1 Sputw3181_1054 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp ANA-3 Shewana3_1014 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-4 Shewmr4_1010 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-7 Shewmr7_1075 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella baltica OS155 Sbal_3255 -45 5.4 ATTTGATAATCGATCTCATTT
Shewanella denitrificans OS217 Sden_2152 -58 5.8 TATTGAGATTCATTATCATTT
Shewanella amazonensis SB2B Sama_2808 -73 4.8 TGGTGAGAATTACTCTCAATT
Shewanella piezotolerans WP3 swp_3069 -102 4.3 TGATCATAATTGTTTTAAATC
Position: -53
Score: 5.6
Sequence: AAATAATAATCATTACCATTA
Position: -20
Score: 5.4
Sequence: AAATGCGAATGGTTATCATAA
Locus tag: ATW7_00380
ATW7_00380 -53 5.6 AAATAATAATCATTACCATTA
-20 5.4 AAATGCGAATGGTTATCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO1482 -49 5 GGATGGAAATCATTATCATTC
Shewanella putrefaciens CN-32 Sputcn32_1237 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp W3-18-1 Sputw3181_2867 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp ANA-3 Shewana3_2944 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-4 Shewmr4_2768 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-7 Shewmr7_2846 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella baltica OS155 Sbal_1315 -49 5 AAATGCAAATCATTACTATTC
Shewanella denitrificans OS217 Sden_1445 -48 5.2 CTATGATAATCATTATCATTC
Shewanella frigidimarina NCIMB 400 Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Shewanella loihica PV-4 Shew_2690 -51 6 TATTGATAATCGTTATCATTT
Shewanella pealeana ATCC 700345 Spea_2930 -51 6 TAATGATAATCGTTATCATCT
Shewanella halifaxensis HAW-EB4 Shal_3021 -51 5.6 TAATAAGAATCGTTATCATCT
Shewanella piezotolerans WP3 swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Shewanella sediminis HAW-EB3 Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Shewanella woodyi ATCC 51908 Swoo_3375 -51 6 TAATGATAATCGTTATCATCT
Position: -54
Score: 5.5
Sequence: TAATGATAGTCGTTATCATTT
Locus tag: ATW7_09161
ATW7_09161 -54 5.5 TAATGATAGTCGTTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_1590
Ortholog function: TonB-dependent siderophore receptor
Shewanella putrefaciens CN-32 Sputcn32_1590 -101 6 AAATGAGAATTATTGTCATCT
Shewanella sp W3-18-1 Sputw3181_2432 -101 6 AAATGAGAATTATTGTCATCT
Shewanella sp ANA-3 Shewana3_2551 -99 6 AAATGAGAATTATTGTCATCT
Shewanella sp MR-4 Shewmr4_2386 -98 6.2 AAATGAGAATTATTGTCATTT
Shewanella sp MR-7 Shewmr7_2458 -98 5.5 AAATGAGAATTATTGTCACCT
Shewanella frigidimarina NCIMB 400 Sfri_0391 -75 5.7 AAATGAGAATAGTTTCCATTA
Position: -74
Score: 4.9
Sequence: TAATAATATTGATTCGCATTC
Locus tag: ATW7_03447
ATW7_03447 -74 4.9 TAATAATATTGATTCGCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0590
Ortholog function: TonB-dependent receptor
Shewanella sp MR-4 Shewmr4_0630 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella sp MR-7 Shewmr7_3399 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella amazonensis SB2B Sama_0590 -2 5.9 AAATGATAACTATTGTCATTA
Shewanella pealeana ATCC 700345 Spea_0713 -66 5.5 AAATGATAATCAATCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_0766 -67 5.6 AAATGAGAATGAATAGCATTA
Shewanella sediminis HAW-EB3 Ssed_3888 -84 5.5 AAATGATAACCACTCTCATTA
Shewanella woodyi ATCC 51908 Swoo_3787 -2 5.5 AAATGATAATCAATCCCATTA
Position: -31
Score: 5.4
Sequence: TATTGATAATAATTACTATTT
Locus tag: ATW7_12358
ATW7_12358 -31 5.4 TATTGATAATAATTACTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpA
Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shewanella oneidensis MR-1 SO0744 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3227 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0714 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3517 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3347 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0606 -76 5.7 AACTGATAACTATTATCATTA
Shewanella baltica OS155 Sbal_0812 -76 5.4 AACTGATAAGCATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0861 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0844 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0897 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Shewanella woodyi ATCC 51908 Swoo_0996 -57 5.4 AATTGATAACTATTATCATCG
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