Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Marinobacter algicola DG893

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Marinobacter algicola DG893
Orthologous TF(s) MDG893_20414
Regulated genes 11
Built upon 2713 sites [see more]
Predicted regulatory interactions in Marinobacter algicola DG893
Locus tag Position Score Sequence
Position: -338
Score: 3.6
Sequence: AAATGTAAACAAATTTAAAATT
Position: -94
Score: 3.7
Sequence: AATAGTGACCGAAATCTCGCTG
Locus tag: MDG893_08055
MDG893_08055 -338 3.6 AAATGTAAACAAATTTAAAATT
-94 3.7 AATAGTGACCGAAATCTCGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shewanella oneidensis MR-1 SO0021 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella putrefaciens CN-32 Sputcn32_0013 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella sp W3-18-1 Sputw3181_0013 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella sp ANA-3 Shewana3_0024 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-4 Shewmr4_0018 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-7 Shewmr7_0016 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella baltica OS155 Sbal_0021 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella amazonensis SB2B Sama_0032 -193 3.8 TGCTGTGCAGTGTATCACAAAG
Shewanella pealeana ATCC 700345 Spea_0018 -134 4.6 TTTTGTGATTCGTCGCACACTG
Shewanella halifaxensis HAW-EB4 Shal_0016 -134 4.4 TTTTGTGATTAGTCGCACACTG
Shewanella piezotolerans WP3 swp_0035 -127 4.4 TTATGTGATTAGTCGCACACTG
Position: 15
Score: 3.8
Sequence: TCATCTGACCTGACTCAAAAAA
Locus tag: MDG893_20309
MDG893_20309 15 3.8 TCATCTGACCTGACTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -11
Score: 3.6
Sequence: ATAAGTGACCCATGGCAAATCA
Locus tag: MDG893_04679
MDG893_04679 -11 3.6 ATAAGTGACCCATGGCAAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1 SO0442 -180 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32 Sputcn32_3401 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1 Sputw3181_0542 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3 Shewana3_0441 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4 Shewmr4_0445 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7 Shewmr7_3584 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155 Sbal_0420 -195 4 TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0493 -195 3.9 TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4 Shew_3412 -182 4 TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345 Spea_0432 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4 Shal_0488 -182 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3 swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3 Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908 Swoo_0296 -192 3.6 TATTGTGAAATCACATATAAAT
Position: -246
Score: 4
Sequence: TTTTGTGATGCGCCTCTCAGCC
Locus tag: MDG893_11889
MDG893_11889 -246 4 TTTTGTGATGCGCCTCTCAGCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: glycerol kinase (EC 2.7.1.30)
Shewanella putrefaciens CN-32 Sputcn32_0476 -195 4.6 AAAAGTGATTTTTATCACTAAA
Shewanella sp W3-18-1 Sputw3181_0379 -195 4.6 AAAAGTGATTTTTATCACTAAA
Shewanella sp ANA-3 Shewana3_3756 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-4 Shewmr4_3583 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-7 Shewmr7_0373 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella baltica OS155 Sbal_0391 -207 4.3 AATGGTGATATTGGTCACTAAA
Shewanella frigidimarina NCIMB 400 Sfri_3815 -169 4.9 AAGTTTGATCATGATCACAATT
Shewanella halifaxensis HAW-EB4 Shal_0444 -114 3.8 TTTTGTGCTGTTTTTTATAAAG
Position: -155
Score: 3.8
Sequence: TGTTGTGAATGTATACGCAAAA
Locus tag: MDG893_13259
MDG893_13259 -155 3.8 TGTTGTGAATGTATACGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4118
Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40)
Shewanella oneidensis MR-1 SO4118 -318 4.4 TATTGTAATTTAGTCAACATTT
-132 4.3 AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32 Sputcn32_0554 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1 Sputw3181_3618 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3 Shewana3_3669 -312 4.2 TATTGTAATTTAATCAACATTT
-119 4.2 GGATATGATGGGTTTCACATTT
Shewanella sp MR-4 Shewmr4_3492 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella sp MR-7 Shewmr7_0460 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217 Sden_3353 -298 3.8 TCTTGTTATTTAAACAACATTT
-197 4.2 TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400 Sfri_3757 -303 4.1 TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345 Spea_3774 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_3859 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella piezotolerans WP3 swp_0481 -181 3.8 TATAGCGATAAAGTTAAAATTT
Shewanella woodyi ATCC 51908 Swoo_4423 -345 3.8 AAGTTTTATCTAGTTAACCCTT