Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PsrA regulog to Marinobacter algicola DG893

Reference regulog properties
Source regulog: PsrA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Marinobacter algicola DG893
Orthologous TF(s) MDG893_00517
Regulated genes 3
Built upon 295 sites [see more]
Predicted regulatory interactions in Marinobacter algicola DG893
Locus tag Position Score Sequence
Position: -165
Score: 5.2
Sequence: TTTCAAACAAACGTTTGTTT
Position: -161
Score: 5.3
Sequence: AAACAAACGTTTGTTTGATT
Locus tag: MDG893_06900
MDG893_06900 -165 5.2 TTTCAAACAAACGTTTGTTT
-161 5.3 AAACAAACGTTTGTTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: electron-transferring-flavoprotein dehydrogenase
Shewanella oneidensis MR-1 SO_4453 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp W3-18-1 Sputw3181_0242 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp ANA-3 Shewana3_0273 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp MR-4 Shewmr4_0272 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp MR-7 Shewmr7_3749 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella baltica OS155 Sbal_0283 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella amazonensis SB2B Sama_3523 -51 5.4 TATAAAACACCCGTTTACAT
Shewanella loihica PV-4 Shew_0086 -47 5.7 AATAAAACACCCGTTTCAAT
Shewanella pealeana ATCC 700345 Spea_4121 -80 5.1 ATTAAAACACCCGTTTATAG
Shewanella halifaxensis HAW-EB4 Shal_0121 -79 5.1 ATTAAAACACCCGTTTATAG
Shewanella piezotolerans WP3 swp_5010 -76 5.1 ATTAAAACACCCGTTTATAG
Shewanella sediminis HAW-EB3 Ssed_4403 -49 5.2 ATTAAAACACCCGTTTAACG
Shewanella woodyi ATCC 51908 Swoo_4794 -45 5.2 ATTAAAACACCCGTTTAACG
Position: -145
Score: 5.7
Sequence: ATTCAAACGACTGTATGAAT
Locus tag: MDG893_08055
MDG893_08055 -145 5.7 ATTCAAACGACTGTATGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: fatty oxidation complex, alpha subunit
Shewanella oneidensis MR-1 SO_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp W3-18-1 Sputw3181_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp ANA-3 Shewana3_0024 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-4 Shewmr4_0018 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-7 Shewmr7_0016 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella baltica OS155 Sbal_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella denitrificans OS217 Sden_0015 -149 6.1 AATTAAACGGCCGTTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0013 -161 6.1 AATTAAACGGCCGTTTAAAT
Shewanella amazonensis SB2B Sama_0032 -145 5.9 AATTAAACGATCGTTTTAAT
Shewanella loihica PV-4 Shew_0019 -161 6.1 AATTAAACAAGTGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_0018 -168 5.6 AACTAAACGGTCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_0016 -168 5.5 AACCAAACGACCGTTTAAAT
Shewanella piezotolerans WP3 swp_0035 -161 5.5 ATTCGAACACTCGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_0023 -228 6.1 AATCAAACACCCGTTTAAAT
Shewanella woodyi ATCC 51908 Swoo_0021 -166 6.1 AATCAAACAAGTGTTTAAAT