Propagation of PsrA regulog to Marinobacter algicola DG893
| Source regulog: | PsrA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Marinobacter algicola DG893 |
| Orthologous TF(s) | MDG893_00517 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -165
Score: 5.2 Sequence: TTTCAAACAAACGTTTGTTT
Position: -161
Score: 5.3 Sequence: AAACAAACGTTTGTTTGATT
Locus tag: MDG893_06900
|
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| MDG893_06900 | -165 | 5.2 | TTTCAAACAAACGTTTGTTT | |
| -161 | 5.3 | AAACAAACGTTTGTTTGATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: electron-transferring-flavoprotein dehydrogenase | ||||
| Shewanella oneidensis MR-1 | SO_4453 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -74 | 5.4 | AATAAAACGCCCGTTTACAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -74 | 5.4 | AATAAAACGCCCGTTTACAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -74 | 5.4 | AATAAAACGCCCGTTTACAA |
| Shewanella baltica OS155 | Sbal_0283 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
| Shewanella amazonensis SB2B | Sama_3523 | -51 | 5.4 | TATAAAACACCCGTTTACAT |
| Shewanella loihica PV-4 | Shew_0086 | -47 | 5.7 | AATAAAACACCCGTTTCAAT |
| Shewanella pealeana ATCC 700345 | Spea_4121 | -80 | 5.1 | ATTAAAACACCCGTTTATAG |
| Shewanella halifaxensis HAW-EB4 | Shal_0121 | -79 | 5.1 | ATTAAAACACCCGTTTATAG |
| Shewanella piezotolerans WP3 | swp_5010 | -76 | 5.1 | ATTAAAACACCCGTTTATAG |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -49 | 5.2 | ATTAAAACACCCGTTTAACG |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -45 | 5.2 | ATTAAAACACCCGTTTAACG |
|
Position: -145
Score: 5.7 Sequence: ATTCAAACGACTGTATGAAT
Locus tag: MDG893_08055
|
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| MDG893_08055 | -145 | 5.7 | ATTCAAACGACTGTATGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadB | ||||
| Ortholog function: fatty oxidation complex, alpha subunit | ||||
| Shewanella oneidensis MR-1 | SO_0021 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0013 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp W3-18-1 | Sputw3181_0013 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp ANA-3 | Shewana3_0024 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp MR-4 | Shewmr4_0018 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp MR-7 | Shewmr7_0016 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella baltica OS155 | Sbal_0021 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella denitrificans OS217 | Sden_0015 | -149 | 6.1 | AATTAAACGGCCGTTTAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0013 | -161 | 6.1 | AATTAAACGGCCGTTTAAAT |
| Shewanella amazonensis SB2B | Sama_0032 | -145 | 5.9 | AATTAAACGATCGTTTTAAT |
| Shewanella loihica PV-4 | Shew_0019 | -161 | 6.1 | AATTAAACAAGTGTTTAAAT |
| Shewanella pealeana ATCC 700345 | Spea_0018 | -168 | 5.6 | AACTAAACGGTCGTTTAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0016 | -168 | 5.5 | AACCAAACGACCGTTTAAAT |
| Shewanella piezotolerans WP3 | swp_0035 | -161 | 5.5 | ATTCGAACACTCGTTTAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_0023 | -228 | 6.1 | AATCAAACACCCGTTTAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0021 | -166 | 6.1 | AATCAAACAAGTGTTTAAAT |