Orthologous regulated operons containing ykuD gene

Properties
Regulog:	PhrR - Vibrionales
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Light-dependent DNA repair
Effector:	Heat shock; Adenosylcobalamin
Phylum:	Proteobacteria/Gamma

Built upon 16 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Vibrio cholerae O1 biovar eltor str. N16961
Position: -76 Score: 6.74493 Sequence: TGTACAAAAAAAATATTTGTACA Position: -28 Score: 5.76117 Sequence: TGTACAGAAATTTTCATTGTATA Locus tag: VCA0055 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: VCA0056 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: VCA0057 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: VCA0058 Name: ykuD Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD	-76	6.7	TGTACAAAAAAAATATTTGTACA	VCA0055
	-28	5.8	TGTACAGAAATTTTCATTGTATA
Vibrio harveyi ATCC BAA-1116
Position: -81 Score: 6.02085 Sequence: TGTACATTTTATTTTCTTGTACA Position: -35 Score: 6.10088 Sequence: TATACAACAAAACATTTTGTATA Locus tag: VIBHAR_05120 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: VIBHAR_05121 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: VIBHAR_05122 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: VIBHAR_05123 Name: ykuD Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD	-81	6	TGTACATTTTATTTTCTTGTACA	VIBHAR_05120
	-35	6.1	TATACAACAAAACATTTTGTATA
Vibrio parahaemolyticus RIMD 2210633
Position: -83 Score: 6.4178 Sequence: TGTACAACTAATTTTCTTGTACA Position: -37 Score: 6.20311 Sequence: TATACAACTAAACTTTTTGTATA Locus tag: VPA1473 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: VPA1472 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: VPA1471 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: VPA1470 Name: ykuD Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD	-83	6.4	TGTACAACTAATTTTCTTGTACA	VPA1473
	-37	6.2	TATACAACTAAACTTTTTGTATA
Vibrio shilonii AK1
Position: -78 Score: 5.61234 Sequence: TGTACAAGATAGAATTTTGTATC Locus tag: VSAK1_17997 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: VSAK1_17992 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: VSAK1_17987 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: VSAK1_17982 Name: ykuD Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD	-78	5.6	TGTACAAGATAGAATTTTGTATC	VSAK1_17997
Vibrio vulnificus CMCP6
Position: -81 Score: 6.74493 Sequence: TGTACAAAAAAAATATTTGTACA Position: -35 Score: 6.67285 Sequence: TGTACAAGTAATTTTTTTGTACA Locus tag: VV21541 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: VV21542 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: VV21543 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: VV21544 Name: ykuD Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD	-81	6.7	TGTACAAAAAAAATATTTGTACA	VV21541
	-35	6.7	TGTACAAGTAATTTTTTTGTACA