Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nifB gene

Properties
Regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Built upon 487 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Desulfomicrobium baculatum DSM 4028
Position: -81
Score: 5.08658
Sequence: TTTGGCACGCCCGTTGCCC
Locus tag: Dbac_0834
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Dbac_0835
Name: glnB-3
Funciton: Nitrogen regulatory protein P-II
Locus tag: Dbac_0836
Name: glnB-2
Funciton: Nitrogen regulatory protein P-II
Locus tag: Dbac_0837
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: Dbac_0838
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: Dbac_0839
Name: DvMF_2618
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: Dbac_0840
Name: null
Funciton: Ferredoxin, 2Fe-2S
Locus tag: Dbac_0841
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: Dbac_0842
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: Dbac_0843
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
nifH-glnB-3-glnB-2-nifD-nifK-DvMF_2618-Dbac_0840-nifE-nifN-nifB -81 5.1 TTTGGCACGCCCGTTGCCC Dbac_0834
Desulfovibrio magneticus RS-1
Position: -62
Score: 4.93293
Sequence: TCTGGCACGCTCCTTGTAG
Locus tag: DMR_17520
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: DMR_17510
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: DMR_17500
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
nifE-nifN-nifB -62 4.9 TCTGGCACGCTCCTTGTAG DMR_17520
Desulfovibrio salexigens DSM 2638
Position: -69
Score: 5.09273
Sequence: TTTGGCACACCACTTGCCT
Locus tag: Desal_0447
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Desal_0446
Name: glnB-3
Funciton: Nitrogen regulatory protein P-II
Locus tag: Desal_0445
Name: glnB-2
Funciton: Nitrogen regulatory protein P-II
Locus tag: Desal_0444
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: Desal_0443
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: Desal_0442
Name: DvMF_2618
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: Desal_0441
Name: null
Funciton: Ferredoxin, 2Fe-2S
Locus tag: Desal_0440
Name: null
Funciton: GCN5-related N-acetyltransferase
Locus tag: Desal_0439
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: Desal_0438
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: Desal_0437
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
nifH-glnB-3-glnB-2-nifD-nifK-DvMF_2618-Desal_0441-Desal_0440-nifE-nifN-nifB -69 5.1 TTTGGCACACCACTTGCCT Desal_0447
Desulfovibrio vulgaris Hildenborough
Position: -326
Score: 4.70353
Sequence: CATGGCACATCCCTTGCCC
Locus tag: DVUA0015
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: DVUA0014
Name: glnB-3
Funciton: Nitrogen regulatory protein P-II
Locus tag: DVUA0013
Name: glnB-2
Funciton: Nitrogen regulatory protein P-II
Locus tag: DVUA0012
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: DVUA0011
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: DVUA0010
Name: null
Funciton: Ferredoxin, 2Fe-2S
Locus tag: DVUA0009
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: DVUA0008
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: DVUA0007
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
nifH-glnB-3-glnB-2-nifD-nifK-DVUA0010-nifE-nifN-nifB -326 4.7 CATGGCACATCCCTTGCCC DVUA0015
Desulfovibrio vulgaris str. Miyazaki F
Position: -110
Score: 4.76905
Sequence: ACTGGCACGGGGTTTGCCC
Locus tag: DvMF_2613
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: DvMF_2614
Name: glnB-3
Funciton: Nitrogen regulatory protein P-II
Locus tag: DvMF_2615
Name: glnB-2
Funciton: Nitrogen regulatory protein P-II
Locus tag: DvMF_2616
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: DvMF_2617
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: DvMF_2618
Name: DvMF_2618
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: DvMF_2619
Name: null
Funciton: Ferredoxin, 2Fe-2S
Locus tag: DvMF_2620
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: DvMF_2621
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: DvMF_2622
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
nifH-glnB-3-glnB-2-nifD-nifK-DvMF_2618-DvMF_2619-nifE-nifN-nifB -110 4.8 ACTGGCACGGGGTTTGCCC DvMF_2613