Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing cydB gene

Properties
Regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Built upon 541 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -334
Score: 4.3337
Sequence: TTGATTTACGTCAA
Locus tag: Sama_2349
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sama_2348
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sama_2347
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -334 4.3 TTGATTTACGTCAA Sama_2349
Shewanella baltica OS155
Position: -342
Score: 4.87295
Sequence: TTGATTTGCATCAA
Locus tag: Sbal_2979
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sbal_2978
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sbal_2977
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -342 4.9 TTGATTTGCATCAA Sbal_2979
Shewanella denitrificans OS217
Position: -153
Score: 5.28803
Sequence: TTGATCTAAATCAA
Locus tag: Sden_1274
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sden_1275
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sden_1276
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -153 5.3 TTGATCTAAATCAA Sden_1274
Shewanella frigidimarina NCIMB 400
Position: -338
Score: 4.21137
Sequence: ATGATTGTGATCAA
Locus tag: Sfri_1142
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sfri_1143
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sfri_1144
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -338 4.2 ATGATTGTGATCAA Sfri_1142
Shewanella halifaxensis HAW-EB4
Position: -336
Score: 4.88305
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.3827
Sequence: TTGATGGGGATCTA
Locus tag: Shal_1381
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shal_1382
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shal_1383
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -336 4.9 TTGATTTGAATCAA Shal_1381
-51 4.4 TTGATGGGGATCTA
Shewanella loihica PV-4
Position: -341
Score: 4.88305
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.3827
Sequence: TTGATGGGGATCTA
Locus tag: Shew_1302
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shew_1303
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shew_1304
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -341 4.9 TTGATTTGAATCAA Shew_1302
-51 4.4 TTGATGGGGATCTA
Shewanella oneidensis MR-1
Position: -338
Score: 4.88305
Sequence: TTGATTTGAATCAA
Locus tag: SO3286
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: SO3285
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
cydA-cydB -338 4.9 TTGATTTGAATCAA SO3286
Shewanella pealeana ATCC 700345
Position: -337
Score: 4.88305
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.3827
Sequence: TTGATGGGGATCTA
Locus tag: Spea_1318
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Spea_1319
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Spea_1320
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -337 4.9 TTGATTTGAATCAA Spea_1318
-51 4.4 TTGATGGGGATCTA
Shewanella piezotolerans WP3
Position: -332
Score: 4.88305
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.3827
Sequence: TTGATGGGGATCTA
Locus tag: swp_1469
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: swp_1470
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: swp_1471
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -332 4.9 TTGATTTGAATCAA swp_1469
-51 4.4 TTGATGGGGATCTA
Shewanella putrefaciens CN-32
Position: -339
Score: 4.88305
Sequence: TTGATTTGAATCAA
Locus tag: Sputcn32_2641
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sputcn32_2640
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sputcn32_2639
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -339 4.9 TTGATTTGAATCAA Sputcn32_2641
Shewanella sediminis HAW-EB3
Position: -336
Score: 4.88305
Sequence: TTGATTTGAATCAA
Locus tag: Ssed_3118
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Ssed_3117
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Ssed_3116
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -336 4.9 TTGATTTGAATCAA Ssed_3118
Shewanella sp ANA-3
Position: -338
Score: 4.88305
Sequence: TTGATTTGAATCAA
Locus tag: Shewana3_1241
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shewana3_1242
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shewana3_1243
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -338 4.9 TTGATTTGAATCAA Shewana3_1241
Shewanella sp MR-4
Position: -338
Score: 4.88305
Sequence: TTGATTTGAATCAA
Locus tag: Shewmr4_1239
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shewmr4_1240
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shewmr4_1241
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -338 4.9 TTGATTTGAATCAA Shewmr4_1239
Shewanella sp MR-7
Position: -338
Score: 4.88305
Sequence: TTGATTTGAATCAA
Locus tag: Shewmr7_1310
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shewmr7_1311
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shewmr7_1312
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -338 4.9 TTGATTTGAATCAA Shewmr7_1310
Shewanella sp W3-18-1
Position: -339
Score: 4.88305
Sequence: TTGATTTGAATCAA
Locus tag: Sputw3181_1366
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sputw3181_1367
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sputw3181_1368
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -339 4.9 TTGATTTGAATCAA Sputw3181_1366
Shewanella woodyi ATCC 51908
Position: -334
Score: 4.88305
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.21988
Sequence: ATGATGGGGATCTA
Locus tag: Swoo_1565
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Swoo_1566
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Swoo_1567
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA-cydB-ybgT -334 4.9 TTGATTTGAATCAA Swoo_1565
-51 4.2 ATGATGGGGATCTA
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