Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ccmB gene

Properties
Regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Built upon 125 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Edwardsiella tarda EIB202
Position: -64
Score: 4.36962
Sequence: TACCCCGAATGAGTTA
Locus tag: ETAE_2461
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: ETAE_2460
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: ETAE_2459
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: ETAE_2458
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: ETAE_2457
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: ETAE_2456
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: ETAE_2455
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: ETAE_2454
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: ETAE_2453
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -64 4.4 TACCCCGAATGAGTTA ETAE_2461
Erwinia carotovora subsp. atroseptica SCRI1043
Position: -86
Score: 4.62542
Sequence: TAACCCTTTAGGGTTA
Locus tag: ECA1882
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: ECA1883
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: ECA1884
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: ECA1885
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: ECA1886
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: ECA1887
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: ECA1888
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: ECA1889
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: ECA1890
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -86 4.6 TAACCCTTTAGGGTTA ECA1882
Escherichia coli str. K-12 substr. MG1655
Position: -129
Score: 4.64962
Sequence: TACCCCGATCGGGGTA
Locus tag: b2208
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: b2207
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: b2206
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: b2205
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: b2204
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: b2203
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: b2202
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: b2201
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: b2200
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: b2199
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: b2198
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: b2197
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: b2196
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: b2195
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: b2194
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
napF-napD-napA-napG-napH-napB-napC-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH -129 4.6 TACCCCGATCGGGGTA b2208
Salmonella typhimurium LT2
Position: -132
Score: 4.78922
Sequence: TACCTCTATCGGGGTA
Locus tag: STM2261
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: STM2260
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: STM2259
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: STM2258
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: STM2257
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: STM2256
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: STM2255
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: STM2254
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM2253
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM2252
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM2251
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM2250
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM2249
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: STM2248
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM2247
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
napF-napD-napA-napG-napH-napB-napC-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH -132 4.8 TACCTCTATCGGGGTA STM2261
Serratia proteamaculans 568
Position: -49
Score: 4.86997
Sequence: TACCCCTATTGGAGTA
Locus tag: Spro_3391
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Spro_3390
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Spro_3389
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Spro_3388
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Spro_3387
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: Spro_3386
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: Spro_3385
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: Spro_3384
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: Spro_3383
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -49 4.9 TACCCCTATTGGAGTA Spro_3391
Yersinia pestis KIM
Position: -112
Score: 4.75559
Sequence: TACCTCTATAAGGGTA
Locus tag: y1567
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: y1568
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: y1569
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: y1570
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: y1571
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: y1572
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: y1573
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: y1574
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: y1575
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -112 4.8 TACCTCTATAAGGGTA y1567