Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing sufD gene

Properties
Regulog: IscR - Sphingomonadales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: activator (repressor)
Biological process: Iron-sulfur cluster biogenesis
Effector: Iron-sulfur cluster redox state
Phylum: Proteobacteria
Built upon 7 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Erythrobacter litoralis HTCC2594
Position: -40
Score: 7.0465
Sequence: AAATCGGAACGATTTGGTCCGATTT
Locus tag: ELI_12790
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: ELI_12785
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: ELI_12780
Name: ELI_12780
Funciton: Hypothetical protein
Locus tag: ELI_12775
Name: ycjD
Funciton: Conserved hypothetical protein
Locus tag: ELI_12770
Name: ELI_12770
Funciton: Hypothetical protein
Locus tag: ELI_12765
Name: ELI_12765
Funciton: Conserved hypothetical protein
Locus tag: ELI_12760
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: ELI_12755
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: ELI_12750
Name: sufS
Funciton: Cysteine desulfurases, SufS subfamily
Locus tag: ELI_12745
Name: sufT
Funciton: Iron sulfur cluster assembly protein SufT
Locus tag: ELI_12740
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
iscR-sufB-ELI_12780-ycjD-ELI_12770-ELI_12765-sufC-sufD-sufS-sufT-sufA -40 7 AAATCGGAACGATTTGGTCCGATTT ELI_12790
Erythrobacter sp. NAP1
Position: -61
Score: 7.05614
Sequence: AAATCCGACTGATTCAGTCCGATTT
Locus tag: NAP1_13233
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: NAP1_13238
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: NAP1_13243
Name: ycjD
Funciton: Conserved hypothetical protein
Locus tag: NAP1_13248
Name: ELI_12765
Funciton: Conserved hypothetical protein
Locus tag: NAP1_13253
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: NAP1_13258
Name: NAP1_13258
Funciton: Hypothetical protein
Locus tag: NAP1_13263
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: NAP1_13268
Name: sufS
Funciton: Cysteine desulfurases, SufS subfamily
Locus tag: NAP1_13273
Name: sufT
Funciton: Iron sulfur cluster assembly protein SufT
Locus tag: NAP1_13278
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
iscR-sufB-ycjD-ELI_12765-sufC-NAP1_13258-sufD-sufS-sufT-sufA -61 7.1 AAATCCGACTGATTCAGTCCGATTT NAP1_13233
Novosphingobium aromaticivorans DSM 12444
Position: -53
Score: 7.07261
Sequence: TAACCGGAGTGATTCGGTCCGATTT
Locus tag: Saro_0194
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: Saro_0195
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: Saro_0196
Name: ycjD
Funciton: Conserved hypothetical protein
Locus tag: Saro_0197
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: Saro_0198
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: Saro_0199
Name: sufS
Funciton: Cysteine desulfurases, SufS subfamily
Locus tag: Saro_0200
Name: sufT
Funciton: Iron sulfur cluster assembly protein SufT
Locus tag: Saro_0201
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
iscR-sufB-ycjD-sufC-sufD-sufS-sufT-sufA -53 7.1 TAACCGGAGTGATTCGGTCCGATTT Saro_0194
Sphingobium japonicum UT26S
Position: -51
Score: 6.84792
Sequence: CAATCGGATGGATTCGATCCGATTT
Locus tag: SJA_C1-34000
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: SJA_C1-33990
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: SJA_C1-33980
Name: ycjD
Funciton: Conserved hypothetical protein
Locus tag: SJA_C1-33970
Name: SJA_C1-33970
Funciton: Hypothetical protein
Locus tag: SJA_C1-33960
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: SJA_C1-33950
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: SJA_C1-33940
Name: sufS
Funciton: Cysteine desulfurases, SufS subfamily
Locus tag: SJA_C1-33930
Name: sufT
Funciton: Iron sulfur cluster assembly protein SufT
Locus tag: SJA_C1-33920
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
iscR-sufB-ycjD-SJA_C1-33970-sufC-sufD-sufS-sufT-sufA -51 6.8 CAATCGGATGGATTCGATCCGATTT SJA_C1-34000
Sphingomonas wittichii RW1
Position: -38
Score: 6.71651
Sequence: CAATCGGATCGAATCAGTCCGATTG
Locus tag: Swit_2919
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: Swit_2918
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: Swit_2917
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: Swit_2916
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: Swit_2915
Name: sufS
Funciton: Cysteine desulfurases, SufS subfamily
Locus tag: Swit_2914
Name: sufT
Funciton: Iron sulfur cluster assembly protein SufT
Locus tag: Swit_2913
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
iscR-sufB-sufC-sufD-sufS-sufT-sufA -38 6.7 CAATCGGATCGAATCAGTCCGATTG Swit_2919
Sphingopyxis alaskensis RB2256
Position: -55
Score: 5.61779
Sequence: TAAGTGGAGTAATTTACTCTAGTTA
Locus tag: Sala_0675
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: Sala_0674
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: Sala_0673
Name: ycjD
Funciton: Conserved hypothetical protein
Locus tag: Sala_0672
Name: ycjD
Funciton: Conserved hypothetical protein
Locus tag: Sala_0671
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: Sala_0670
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: Sala_0669
Name: sufS
Funciton: Cysteine desulfurases, SufS subfamily
Locus tag: Sala_0668
Name: sufT
Funciton: Iron sulfur cluster assembly protein SufT
Locus tag: Sala_0667
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
iscR-sufB-ycjD-ycjD-sufC-sufD-sufS-sufT-sufA -55 5.6 TAAGTGGAGTAATTTACTCTAGTTA Sala_0675
Zymomonas mobilis subsp. mobilis ZM4
Position: -111
Score: 6.22362
Sequence: TAATCAGACAAATTTAGTCTTGTTT
Locus tag: ZMO0422
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: ZMO0423
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: ZMO0425
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: ZMO0426
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: ZMO0427
Name: sufS
Funciton: Cysteine desulfurases, SufS subfamily
Locus tag: ZMO0428
Name: sufT
Funciton: Iron sulfur cluster assembly protein SufT
Locus tag: ZMO0429
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
iscR-sufB-sufC-sufD-sufS-sufT-sufA -111 6.2 TAATCAGACAAATTTAGTCTTGTTT ZMO0422
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