Orthologous regulated operons containing pucD gene

Properties
Regulog:	TnrA - Bacillales
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor (activator)
Biological process:	Nitrogen assimilation
Effector:	NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum:	Firmicutes

Built upon 304 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Bacillus clausii KSM-K16
Position: -270 Score: 4.52983 Sequence: TGTGAAAAAACCTTACA Position: -141 Score: 4.0423 Sequence: GGGGAGAAGATCTAACA Locus tag: ABC3747 Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein Locus tag: ABC3746 Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter permease Locus tag: ABC3745 Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Locus tag: ABC3744 Name: pucA Funciton: Xanthine dehydrogenase subunit A Locus tag: ABC3743 Name: pucB Funciton: Xanthine dehydrogenase Locus tag: ABC3742 Name: pucC Funciton: Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) Locus tag: ABC3741 Name: pucD Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) Locus tag: ABC3740 Name: pucE Funciton: Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)
ABC3747-ABC3746-ABC3745-pucA-pucB-pucC-pucD-pucE	-270	4.5	TGTGAAAAAACCTTACA	ABC3747
	-141	4	GGGGAGAAGATCTAACA
Bacillus subtilis subsp. subtilis str. 168
Position: -125 Score: 4.65577 Sequence: TGTTTCATTTTCTGACA Position: -101 Score: 4.02253 Sequence: AGTCATTTTTTCTTCCA Locus tag: BSU32510 Name: pucA Funciton: Xanthine dehydrogenase subunit A Locus tag: BSU32500 Name: pucB Funciton: Xanthine dehydrogenase Locus tag: BSU32490 Name: pucC Funciton: Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) Locus tag: BSU32480 Name: pucD Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) Locus tag: BSU32470 Name: pucE Funciton: xanthine dehydrogenase, iron-sulfur subunit
pucA-pucB-pucC-pucD-pucE	-125	4.7	TGTTTCATTTTCTGACA	BSU32510
	-101	4	AGTCATTTTTTCTTCCA
Paenibacillus sp. JDR-2
Position: -179 Score: 4.12283 Sequence: TGTGATCTATTGTTACG Position: -96 Score: 4.30272 Sequence: TGTAAGATATATTGACG Locus tag: Pjdr2_3323 Name: null Funciton: Basic membrane lipoprotein Locus tag: Pjdr2_3322 Name: null Funciton: ABC transporter related Locus tag: Pjdr2_3321 Name: null Funciton: Inner-membrane translocator Locus tag: Pjdr2_3320 Name: null Funciton: Inner-membrane translocator Locus tag: Pjdr2_3319 Name: pucC Funciton: Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) Locus tag: Pjdr2_3318 Name: pucD Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) Locus tag: Pjdr2_3317 Name: null Funciton: (2Fe-2S)-binding domain protein Locus tag: Pjdr2_3316 Name: null Funciton: Uricase (EC 1.7.3.3) Locus tag: Pjdr2_3315 Name: pucL Funciton: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (EC 4.1.1.n1) / Uricase (EC 1.7.3.3) Locus tag: Pjdr2_3314 Name: pucM Funciton: 5-hydroxyisourate hydrolase Locus tag: Pjdr2_3313 Name: pucH Funciton: Allantoinase (EC 3.5.2.5) Locus tag: Pjdr2_3312 Name: pucF Funciton: Allantoate amidohydrolase (EC 3.5.3.9) Locus tag: Pjdr2_3311 Name: pucG Funciton: Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
Pjdr2_3323-Pjdr2_3322-Pjdr2_3321-Pjdr2_3320-pucC-pucD-Pjdr2_3317-Pjdr2_3316-pucL-pucM-pucH-pucF-pucG	-179	4.1	TGTGATCTATTGTTACG	Pjdr2_3323
	-96	4.3	TGTAAGATATATTGACG