Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ligA gene

Properties
Regulog: VanR - Xanthomonadales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Built upon 12 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Xanthomonas axonopodis pv. citri str. 306
Position: -246
Score: 4.67
Sequence: ATTGGCTCCATT
Position: -141
Score: 4.33
Sequence: TTTGGATCCCAA
Position: -88
Score: 4.41
Sequence: TTGGGATCCATT
Locus tag: XAC0878
Name: pcaH
Funciton: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
Locus tag: XAC0879
Name: ligA
Funciton: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
pcaH-ligA -246 4.7 ATTGGCTCCATT XAC0878
-141 4.3 TTTGGATCCCAA
-88 4.4 TTGGGATCCATT
Xanthomonas campestris pv. campestris str. ATCC 33913
Position: -247
Score: 3.96
Sequence: ATGGGCTCCATT
Position: -142
Score: 4.33
Sequence: TTTGGATCCCAA
Position: -90
Score: 3.62
Sequence: TTGGGATCCCAA
Locus tag: XCC0804
Name: pcaH
Funciton: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
Locus tag: XCC0805
Name: ligA
Funciton: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
pcaH-ligA -247 4 ATGGGCTCCATT XCC0804
-142 4.3 TTTGGATCCCAA
-90 3.6 TTGGGATCCCAA
© 2009-2020 RegPrecise