Orthologous regulated operons containing rbsA gene
| Regulog: | RbsR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Citrobacter koseri ATCC BAA-895 | ||||
|
Position: -155
Score: 7.1264 Sequence: CCAGCGAAACGTTTCGCTAG
Locus tag: CKO_00088
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: CKO_00089
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: CKO_00090
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: CKO_00091
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: CKO_00092
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: CKO_00093
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -155 | 7.1 | CCAGCGAAACGTTTCGCTAG | CKO_00088 |
| Edwardsiella tarda EIB202 | ||||
|
Position: -31
Score: 7.04876 Sequence: ATAGCGAAACGTTTCGCTGG
Locus tag: ETAE_3516
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: ETAE_3515
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: ETAE_3514
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: ETAE_3513
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: ETAE_3512
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: ETAE_3511
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -31 | 7 | ATAGCGAAACGTTTCGCTGG | ETAE_3516 |
| Enterobacter sp. 638 | ||||
|
Position: -32
Score: 7.1264 Sequence: TCAGCGAAACGTTTCGCTAG
Locus tag: Ent638_4116
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Ent638_4115
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Ent638_4114
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Ent638_4113
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Ent638_4112
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Ent638_4111
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -32 | 7.1 | TCAGCGAAACGTTTCGCTAG | Ent638_4116 |
| Erwinia amylovora ATCC 49946 | ||||
|
Position: -108
Score: 6.48647 Sequence: CCAGCAAAACGTTTCGATGG
Position: -30
Score: 6.06562 Sequence: CTGGCGAAACGTTTCGCTGT
Locus tag: EAM_0015
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: EAM_0016
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: EAM_0017
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: EAM_0018
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: EAM_0019
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: EAM_0020
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -108 | 6.5 | CCAGCAAAACGTTTCGATGG | EAM_0015 |
| -30 | 6.1 | CTGGCGAAACGTTTCGCTGT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||||
|
Position: -109
Score: 6.75762 Sequence: TTAGCGAAACGTTTCGATGG
Position: -32
Score: 7.09193 Sequence: TTAGCGAAACGTTTCGCTGG
Locus tag: ECA0010
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: ECA0011
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: ECA0012
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: ECA0013
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: ECA0014
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: ECA0015
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -109 | 6.8 | TTAGCGAAACGTTTCGATGG | ECA0010 |
| -32 | 7.1 | TTAGCGAAACGTTTCGCTGG | ||
| Escherichia coli str. K-12 substr. MG1655 | ||||
|
Position: -31
Score: 7.00269 Sequence: TCAGCGAAACGTTTCGCTGA
Locus tag: b3748
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: b3749
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: b3750
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: b3751
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: b3752
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: b3753
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -31 | 7 | TCAGCGAAACGTTTCGCTGA | b3748 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | ||||
|
Position: -116
Score: 6.21851 Sequence: CTCGCGAAACGTTTCGATGG
Position: -38
Score: 7.06324 Sequence: TTAGCGAAACGTTTCGCTAG
Locus tag: KPN_04153
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: KPN_04154
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: KPN_04155
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: KPN_04156
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: KPN_04157
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: KPN_04158
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -116 | 6.2 | CTCGCGAAACGTTTCGATGG | KPN_04153 |
| -38 | 7.1 | TTAGCGAAACGTTTCGCTAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | ||||
|
Position: -110
Score: 6.18982 Sequence: TTATCGAAACGTTTCGATAG
Position: -32
Score: 6.86767 Sequence: ATAGCGAAACGTTTCGCTAA
Locus tag: plu0055
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: plu0056
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: plu0057
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: plu0058
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: plu0059
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: plu0060
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -110 | 6.2 | TTATCGAAACGTTTCGATAG | plu0055 |
| -32 | 6.9 | ATAGCGAAACGTTTCGCTAA | ||
| Proteus mirabilis HI4320 | ||||
|
Position: -30
Score: 6.95951 Sequence: ACAGCGAAACGTTTCGCTGA
Locus tag: PMI0093
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PMI0092
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PMI0091
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PMI0090
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PMI0089
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PMI0088
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -30 | 7 | ACAGCGAAACGTTTCGCTGA | PMI0093 |
| Salmonella typhimurium LT2 | ||||
|
Position: -111
Score: 6.21851 Sequence: CTAGCGAAACGTTTCGACGG
Position: -32
Score: 7.1264 Sequence: CCAGCGAAACGTTTCGCTAG
Locus tag: STM3881
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: STM3882
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: STM3883
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: STM3884
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: STM3885
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: STM3886
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -111 | 6.2 | CTAGCGAAACGTTTCGACGG | STM3881 |
| -32 | 7.1 | CCAGCGAAACGTTTCGCTAG | ||
| Serratia proteamaculans 568 | ||||
|
Position: -117
Score: 6.79209 Sequence: CCAGCGAAACGTTTCGATAG
Position: -37
Score: 6.90313 Sequence: CAAGCGAAACGTTTCGCTGG
Locus tag: Spro_4901
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Spro_4900
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Spro_4899
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Spro_4898
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Spro_4897
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Spro_4896
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -117 | 6.8 | CCAGCGAAACGTTTCGATAG | Spro_4901 |
| -37 | 6.9 | CAAGCGAAACGTTTCGCTGG | ||