Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nrtD gene

Properties
Regulog: NtcB - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Phylum: Cyanobacteria
Built upon 44 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Cyanothece sp. PCC 7425
Position: -174
Score: 4.46833
Sequence: ATGCAGGTTTGGCAT
Locus tag: Cyan7425_4573
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: Cyan7425_4572
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: Cyan7425_4571
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: Cyan7425_4570
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: Cyan7425_4569
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
nirA-nrtA-nrtB-nrtC-nrtD -174 4.5 ATGCAGGTTTGGCAT Cyan7425_4573
Cyanothece sp. PCC 8801
Position: -235
Score: 4.50998
Sequence: ATGCAAAAACCACAT
Position: -213
Score: 3.97851
Sequence: ATGCTTTTATTGCAA
Locus tag: PCC8801_4396
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: PCC8801_4395
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: PCC8801_4394
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: PCC8801_4393
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
nrtA-nrtB-nrtC-nrtD -235 4.5 ATGCAAAAACCACAT PCC8801_4396
-213 4 ATGCTTTTATTGCAA
Microcystis aeruginosa NIES-843
Position: -395
Score: 3.65433
Sequence: ATGCTTTTATGACAT
Locus tag: MAE_14800
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: MAE_14790
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: MAE_14780
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: MAE_14770
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
nrtA-nrtB-nrtC-nrtD -395 3.7 ATGCTTTTATGACAT MAE_14800
Nostoc sp. PCC 7120
Position: -562
Score: 4.76358
Sequence: ATGCAGAAAACGCAT
Locus tag: alr0607
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: alr0608
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: alr0609
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: alr0610
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: alr0611
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: alr0612
Name: narB
Funciton: nitrate reductase
nirA-nrtA-nrtB-nrtC-nrtD-narB -562 4.8 ATGCAGAAAACGCAT alr0607
Synechococcus elongatus PCC 7942
Position: -109
Score: 4.29271
Sequence: TTGCAGAACATGCAT
Locus tag: Synpcc7942_1240
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: Synpcc7942_1239
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: Synpcc7942_1238
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: Synpcc7942_1237
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: Synpcc7942_1236
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: Synpcc7942_1235
Name: narB
Funciton: nitrate reductase
nirA-nrtA-nrtB-nrtC-nrtD-narB -109 4.3 TTGCAGAACATGCAT Synpcc7942_1240
Synechococcus sp. JA-3-3Ab
Position: -101
Score: 4.3847
Sequence: ATGACAAAACTGCAT
Locus tag: CYA_0612
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: CYA_0613
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: CYA_0614
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: CYA_0615
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: CYA_0616
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
nirA-nrtA-nrtB-nrtC-nrtD -101 4.4 ATGACAAAACTGCAT CYA_0612
Synechocystis sp. PCC 6803
Position: -125
Score: 4.93558
Sequence: ATGCAGTAATCGCAT
Locus tag: sll1450
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: sll1451
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: sll1452
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: sll1453
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: sll1454
Name: narB
Funciton: nitrate reductase
nrtA-nrtB-nrtC-nrtD-narB -125 4.9 ATGCAGTAATCGCAT sll1450
Thermosynechococcus elongatus BP-1
Position: -111
Score: 4.396
Sequence: ATACAAAAACTGTAT
Locus tag: tlr1349
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: tlr1350
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: tlr1351
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: tlr1352
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: tlr1353
Name: null
Funciton: ORF_ID:tlr1353~putative transposase
Locus tag: tlr1354
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: tlr1355
Name: narB
Funciton: nitrate reductase
nirA-nrtA-nrtB-nrtC-tlr1353-nrtD-narB -111 4.4 ATACAAAAACTGTAT tlr1349
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