Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing paaI gene

Properties
Regulog: LiuR - Comamonadaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Built upon 59 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Comamonas testosteroni KF-1
Position: -50
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -44
Score: 5.34588
Sequence: GTTTACGTAAACGTCAAT
Locus tag: CtesDRAFT_4405
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: CtesDRAFT_4406
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: CtesDRAFT_4407
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: CtesDRAFT_4408
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: CtesDRAFT_4409
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: CtesDRAFT_4410
Name: null
Funciton: hypothetical protein
Locus tag: CtesDRAFT_4411
Name: null
Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: CtesDRAFT_4412
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: CtesDRAFT_4413
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
paaI-liuA-cah-aceK-ivdA-CtesDRAFT_4410-CtesDRAFT_4411-CtesDRAFT_4412-ivdC -50 6.6 ATTGACGTTTACGTAAAC CtesDRAFT_4405
-44 5.3 GTTTACGTAAACGTCAAT
Delftia acidovorans SPH-1
Position: -37
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -31
Score: 4.984
Sequence: GTTTACGTAAACGTAATT
Locus tag: Daci_5992
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Daci_5991
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5990
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Daci_5989
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Daci_5988
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Daci_5987
Name: null
Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: Daci_5986
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Daci_5985
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5984
Name: Daci_5984
Funciton: Alpha/beta hydrolase fold (EC 3.8.1.5)
paaI-liuA-cah-aceK-ivdA-Daci_5987-Daci_5986-ivdC-Daci_5984 -37 6.6 ATTGACGTTTACGTAAAC Daci_5992
-31 5 GTTTACGTAAACGTAATT
Leptothrix cholodnii SP-6
Position: -36
Score: 6.59853
Sequence: ATTGACGTTAACGTAAAC
Position: -30
Score: 5.2259
Sequence: GTTAACGTAAACGTCAAT
Locus tag: Lcho_4202
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Lcho_4203
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Lcho_4204
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Lcho_4205
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Lcho_4206
Name: null
Funciton: Putative amino acid efflux transporter, Rht family
Locus tag: Lcho_4207
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
paaI-cah-aceK-ivdA-Lcho_4206-ivdC -36 6.6 ATTGACGTTAACGTAAAC Lcho_4202
-30 5.2 GTTAACGTAAACGTCAAT
Polaromonas naphthalenivorans CJ2
Position: -74
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -68
Score: 5.14609
Sequence: GTTTACGTAAACGTCAAG
Locus tag: Pnap_0454
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Pnap_0455
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Pnap_0456
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Pnap_0457
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Pnap_0458
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Pnap_0459
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
paaI-liuA-cah-aceK-ivdA-ivdC -74 6.6 ATTGACGTTTACGTAAAC Pnap_0454
-68 5.1 GTTTACGTAAACGTCAAG
Polaromonas sp. JS666
Position: -135
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -129
Score: 5.34588
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Bpro_4191
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Bpro_4190
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Bpro_4189
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Bpro_4188
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Bpro_4187
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Bpro_4186
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Bpro_4185
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
paaI-liuA-cah-aceK-ivdA-Bpro_4186-ivdC -135 6.6 ATTGACGTTTACGTAAAC Bpro_4191
-129 5.3 GTTTACGTAAACGTCAAT
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