Orthologous regulated operons containing paaI gene
| Regulog: | LiuR - Comamonadaceae |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Comamonas testosteroni KF-1 | ||||
|
Position: -50
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -44
Score: 5.34588 Sequence: GTTTACGTAAACGTCAAT
Locus tag: CtesDRAFT_4405
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: CtesDRAFT_4406
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: CtesDRAFT_4407
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: CtesDRAFT_4408
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: CtesDRAFT_4409
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: CtesDRAFT_4410
Name: null Funciton: hypothetical protein
Locus tag: CtesDRAFT_4411
Name: null Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: CtesDRAFT_4412
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: CtesDRAFT_4413
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| paaI-liuA-cah-aceK-ivdA-CtesDRAFT_4410-CtesDRAFT_4411-CtesDRAFT_4412-ivdC | -50 | 6.6 | ATTGACGTTTACGTAAAC | CtesDRAFT_4405 |
| -44 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Delftia acidovorans SPH-1 | ||||
|
Position: -37
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -31
Score: 4.984 Sequence: GTTTACGTAAACGTAATT
Locus tag: Daci_5992
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Daci_5991
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5990
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Daci_5989
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Daci_5988
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Daci_5987
Name: null Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: Daci_5986
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Daci_5985
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5984
Name: Daci_5984 Funciton: Alpha/beta hydrolase fold (EC 3.8.1.5) |
||||
| paaI-liuA-cah-aceK-ivdA-Daci_5987-Daci_5986-ivdC-Daci_5984 | -37 | 6.6 | ATTGACGTTTACGTAAAC | Daci_5992 |
| -31 | 5 | GTTTACGTAAACGTAATT | ||
| Leptothrix cholodnii SP-6 | ||||
|
Position: -36
Score: 6.59853 Sequence: ATTGACGTTAACGTAAAC
Position: -30
Score: 5.2259 Sequence: GTTAACGTAAACGTCAAT
Locus tag: Lcho_4202
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Lcho_4203
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Lcho_4204
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Lcho_4205
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Lcho_4206
Name: null Funciton: Putative amino acid efflux transporter, Rht family
Locus tag: Lcho_4207
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| paaI-cah-aceK-ivdA-Lcho_4206-ivdC | -36 | 6.6 | ATTGACGTTAACGTAAAC | Lcho_4202 |
| -30 | 5.2 | GTTAACGTAAACGTCAAT | ||
| Polaromonas naphthalenivorans CJ2 | ||||
|
Position: -74
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -68
Score: 5.14609 Sequence: GTTTACGTAAACGTCAAG
Locus tag: Pnap_0454
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Pnap_0455
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Pnap_0456
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Pnap_0457
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Pnap_0458
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Pnap_0459
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| paaI-liuA-cah-aceK-ivdA-ivdC | -74 | 6.6 | ATTGACGTTTACGTAAAC | Pnap_0454 |
| -68 | 5.1 | GTTTACGTAAACGTCAAG | ||
| Polaromonas sp. JS666 | ||||
|
Position: -135
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -129
Score: 5.34588 Sequence: GTTTACGTAAACGTCAAT
Locus tag: Bpro_4191
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Bpro_4190
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Bpro_4189
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Bpro_4188
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Bpro_4187
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Bpro_4186
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Bpro_4185
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| paaI-liuA-cah-aceK-ivdA-Bpro_4186-ivdC | -135 | 6.6 | ATTGACGTTTACGTAAAC | Bpro_4191 |
| -129 | 5.3 | GTTTACGTAAACGTCAAT | ||