Orthologous regulated operons containing liuA gene
| Regulog: | LiuR - Comamonadaceae |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||||
|
Position: -102
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -96
Score: 4.78422 Sequence: GTTTACGTAAACGTAATG
Locus tag: Aave_4371
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Aave_4370
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Aave_4369
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Aave_4368
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Aave_4367
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Aave_4366
Name: null Funciton: acyltransferase 3
Locus tag: Aave_4365
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| liuA-cah-aceK-ivdA-Aave_4367-Aave_4366-ivdC | -102 | 6.6 | ATTGACGTTTACGTAAAC | Aave_4371 |
| -96 | 4.8 | GTTTACGTAAACGTAATG | ||
| Acidovorax sp. JS42 | ||||
|
Position: -134
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -128
Score: 4.78422 Sequence: GTTTACGTAAACGTAATA
Locus tag: Ajs_3779
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Ajs_3778
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Ajs_3777
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Ajs_3776
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Ajs_3775
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Ajs_3774
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| liuA-cah-aceK-ivdA-Ajs_3775-ivdC | -134 | 6.6 | ATTGACGTTTACGTAAAC | Ajs_3779 |
| -128 | 4.8 | GTTTACGTAAACGTAATA | ||
| Comamonas testosteroni KF-1 | ||||
|
Position: -50
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -44
Score: 5.34588 Sequence: GTTTACGTAAACGTCAAT
Locus tag: CtesDRAFT_4405
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: CtesDRAFT_4406
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: CtesDRAFT_4407
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: CtesDRAFT_4408
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: CtesDRAFT_4409
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: CtesDRAFT_4410
Name: null Funciton: hypothetical protein
Locus tag: CtesDRAFT_4411
Name: null Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: CtesDRAFT_4412
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: CtesDRAFT_4413
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| paaI-liuA-cah-aceK-ivdA-CtesDRAFT_4410-CtesDRAFT_4411-CtesDRAFT_4412-ivdC | -50 | 6.6 | ATTGACGTTTACGTAAAC | CtesDRAFT_4405 |
| -44 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Delftia acidovorans SPH-1 | ||||
|
Position: -37
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -31
Score: 4.984 Sequence: GTTTACGTAAACGTAATT
Locus tag: Daci_5992
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Daci_5991
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5990
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Daci_5989
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Daci_5988
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Daci_5987
Name: null Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: Daci_5986
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Daci_5985
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5984
Name: Daci_5984 Funciton: Alpha/beta hydrolase fold (EC 3.8.1.5) |
||||
| paaI-liuA-cah-aceK-ivdA-Daci_5987-Daci_5986-ivdC-Daci_5984 | -37 | 6.6 | ATTGACGTTTACGTAAAC | Daci_5992 |
| -31 | 5 | GTTTACGTAAACGTAATT | ||
| Polaromonas naphthalenivorans CJ2 | ||||
|
Position: -74
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -68
Score: 5.14609 Sequence: GTTTACGTAAACGTCAAG
Locus tag: Pnap_0454
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Pnap_0455
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Pnap_0456
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Pnap_0457
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Pnap_0458
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Pnap_0459
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| paaI-liuA-cah-aceK-ivdA-ivdC | -74 | 6.6 | ATTGACGTTTACGTAAAC | Pnap_0454 |
| -68 | 5.1 | GTTTACGTAAACGTCAAG | ||
| Polaromonas sp. JS666 | ||||
|
Position: -135
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -129
Score: 5.34588 Sequence: GTTTACGTAAACGTCAAT
Locus tag: Bpro_4191
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Bpro_4190
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Bpro_4189
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Bpro_4188
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Bpro_4187
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Bpro_4186
Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Bpro_4185
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| paaI-liuA-cah-aceK-ivdA-Bpro_4186-ivdC | -135 | 6.6 | ATTGACGTTTACGTAAAC | Bpro_4191 |
| -129 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Rhodoferax ferrireducens DSM 15236 | ||||
|
Position: -92
Score: 6.63969 Sequence: ATTGACGTTTACGTAAAC
Position: -86
Score: 5.34588 Sequence: GTTTACGTAAACGTCAAT
Locus tag: Rfer_3843
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Rfer_3842
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Rfer_3841
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Rfer_3840
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Rfer_3839
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Rfer_3838
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
||||
| liuR-liuA-cah-aceK-ivdA-ivdC | -92 | 6.6 | ATTGACGTTTACGTAAAC | Rfer_3843 |
| -86 | 5.3 | GTTTACGTAAACGTCAAT | ||