Orthologous regulated operons containing rbsK gene
| Regulog: | RbsR - Vibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Photobacterium profundum SS9 | ||||
|
Position: -118
Score: 5.73617 Sequence: CCATCGAAACGTTTGCGTAA
Locus tag: PBPRB1556
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PBPRB1557
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PBPRB1558
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PBPRB1559
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PBPRB1560
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PBPRB1561
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -118 | 5.7 | CCATCGAAACGTTTGCGTAA | PBPRB1556 |
| Vibrio angustum S14 | ||||
|
Position: -226
Score: 6.75955 Sequence: TTATCGAAACGTTTCGATGG
Position: -96
Score: 6.62481 Sequence: CTATCGAAACGTTTCGATGG
Locus tag: VAS14_09005
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VAS14_09010
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VAS14_09015
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VAS14_09020
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VAS14_09025
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VAS14_09030
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -226 | 6.8 | TTATCGAAACGTTTCGATGG | VAS14_09005 |
| -96 | 6.6 | CTATCGAAACGTTTCGATGG | ||
| Vibrio cholerae O1 biovar eltor str. N16961 | ||||
|
Position: -86
Score: 6.98537 Sequence: TCATCGAAACGTTTCGATGT
Locus tag: VCA0127
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VCA0128
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VCA0129
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VCA0130
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VCA0131
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VCA0132
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -86 | 7 | TCATCGAAACGTTTCGATGT | VCA0127 |
| Vibrio fischeri ES114 | ||||
|
Position: -71
Score: 6.39547 Sequence: TTACGCAAACGTTTCGATGA
Locus tag: VF_1444
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VF_1445
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VF_1446
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VF_1447
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VF_1448
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VF_1449
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -71 | 6.4 | TTACGCAAACGTTTCGATGA | VF_1444 |
| Vibrio harveyi ATCC BAA-1116 | ||||
|
Position: -222
Score: 6.18918 Sequence: CTATCGAAACGTTTCGATTT
Position: -95
Score: 6.98537 Sequence: TCATCGAAACGTTTCGATGT
Locus tag: VIBHAR_06146
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VIBHAR_06145
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VIBHAR_06144
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VIBHAR_06143
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VIBHAR_06142
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VIBHAR_06141
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -222 | 6.2 | CTATCGAAACGTTTCGATTT | VIBHAR_06146 |
| -95 | 7 | TCATCGAAACGTTTCGATGT | ||
| Vibrio parahaemolyticus RIMD 2210633 | ||||
|
Position: -226
Score: 7.04507 Sequence: CCATCGAAACGTTTCGATGA
Position: -96
Score: 6.69483 Sequence: GCATCGAAACGTTTCGATGA
Locus tag: VPA1087
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VPA1086
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VPA1085
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VPA1084
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VPA1083
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VPA1082
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -226 | 7 | CCATCGAAACGTTTCGATGA | VPA1087 |
| -96 | 6.7 | GCATCGAAACGTTTCGATGA | ||
| Vibrio salmonicida LFI1238 | ||||
|
Position: -70
Score: 6.39547 Sequence: TTACGCAAACGTTTCGATGA
Locus tag: VSAL_I1372
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VSAL_I1371
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VSAL_I1370
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VSAL_I1369
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VSAL_I1368
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VSAL_I1367
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -70 | 6.4 | TTACGCAAACGTTTCGATGA | VSAL_I1372 |
| Vibrio shilonii AK1 | ||||
|
Position: -170
Score: 6.56707 Sequence: TCATCGAAACGTTTCGATAG
Position: -87
Score: 7.17982 Sequence: TCATCGAAACGTTTCGATGA
Locus tag: VSAK1_16182
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VSAK1_16177
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VSAK1_16172
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VSAK1_16167
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VSAK1_16162
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VSAK1_16157
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -170 | 6.6 | TCATCGAAACGTTTCGATAG | VSAK1_16182 |
| -87 | 7.2 | TCATCGAAACGTTTCGATGA | ||
| Vibrio splendidus LGP32 | ||||
|
Position: -104
Score: 7.04507 Sequence: CCATCGAAACGTTTCGATGA
Position: -26
Score: 6.62481 Sequence: CTATCGAAACGTTTCGATGG
Locus tag: VS_II0940
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VS_II0941
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VS_II0942
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VS_II0943
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VS_II0944
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VS_II0945
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -104 | 7 | CCATCGAAACGTTTCGATGA | VS_II0940 |
| -26 | 6.6 | CTATCGAAACGTTTCGATGG | ||
| Vibrio vulnificus CMCP6 | ||||
|
Position: -72
Score: 7.17982 Sequence: TCATCGAAACGTTTCGATGA
Locus tag: VV20061
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: VV20062
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: VV20063
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: VV20064
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: VV20065
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: VV20066
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -72 | 7.2 | TCATCGAAACGTTTCGATGA | VV20061 |