Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing hmgC gene

Properties
Regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Built upon 312 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -234
Score: 4.29557
Sequence: GTGTAAAAAGAATTTGCCAG
Position: -150
Score: 4.41982
Sequence: CTGTATTTAAAAGTTTACAA
Locus tag: Sama_2219
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sama_2218
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -234 4.3 GTGTAAAAAGAATTTGCCAG Sama_2219
-150 4.4 CTGTATTTAAAAGTTTACAA
Shewanella baltica OS155
Position: -358
Score: 3.8297
Sequence: ATGTAACAGTATCGTTCCAC
Position: -274
Score: 4.02177
Sequence: ACGTAATGATTAGTTTACGA
Locus tag: Sbal_1487
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sbal_1488
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -358 3.8 ATGTAACAGTATCGTTCCAC Sbal_1487
-274 4 ACGTAATGATTAGTTTACGA
Shewanella denitrificans OS217
Position: -228
Score: 4.11952
Sequence: ATGTAACGAATTAGTGCCAT
Position: -146
Score: 4.06206
Sequence: TTGTACTGAAAAGTTTACAG
Locus tag: Sden_2592
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sden_2591
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -228 4.1 ATGTAACGAATTAGTGCCAT Sden_2592
-146 4.1 TTGTACTGAAAAGTTTACAG
Shewanella frigidimarina NCIMB 400
Position: -155
Score: 4.85232
Sequence: TTGTAACGAATAATTTACAA
Locus tag: Sfri_1331
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sfri_1332
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -155 4.9 TTGTAACGAATAATTTACAA Sfri_1331
Shewanella halifaxensis HAW-EB4
Position: -183
Score: 4.66123
Sequence: CTGTAAGTATAAGTTTACAA
Locus tag: Shal_1534
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shal_1535
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -183 4.7 CTGTAAGTATAAGTTTACAA Shal_1534
Shewanella loihica PV-4
Position: -169
Score: 4.49333
Sequence: CTGTCATGAATTGTTTACAA
Locus tag: Shew_1438
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shew_1439
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -169 4.5 CTGTCATGAATTGTTTACAA Shew_1438
Shewanella oneidensis MR-1
Position: -323
Score: 3.8297
Sequence: ATGTAACAGTATCGTTCCAC
Position: -239
Score: 4.32352
Sequence: ACGTAATGATTAGTTTACAG
Locus tag: SO_1670
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: SO_1671
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -323 3.8 ATGTAACAGTATCGTTCCAC SO_1670
-239 4.3 ACGTAATGATTAGTTTACAG
Shewanella pealeana ATCC 700345
Position: -197
Score: 4.78048
Sequence: GTGTATCTATAAGTTTACAC
Locus tag: Spea_1451
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Spea_1452
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -197 4.8 GTGTATCTATAAGTTTACAC Spea_1451
Shewanella piezotolerans WP3
Position: -179
Score: 4.76526
Sequence: CTGTAATTATATGTTTACAA
Locus tag: swp_1653
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: swp_1654
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -179 4.8 CTGTAATTATATGTTTACAA swp_1653
Shewanella putrefaciens CN-32
Position: -352
Score: 3.94524
Sequence: ATGTAACCGTATCGTTCCAC
Position: -268
Score: 4.02177
Sequence: ACGTAATGATTAGTTTACGA
Locus tag: Sputcn32_1389
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sputcn32_1390
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -352 3.9 ATGTAACCGTATCGTTCCAC Sputcn32_1389
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sediminis HAW-EB3
Position: -238
Score: 3.99554
Sequence: ATGTAAAAGCTTGTTGCCAC
Position: -155
Score: 4.04389
Sequence: GTGTAACTGTTTATTTACGT
Locus tag: Ssed_2927
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Ssed_2926
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -238 4 ATGTAAAAGCTTGTTGCCAC Ssed_2927
-155 4 GTGTAACTGTTTATTTACGT
Shewanella sp ANA-3
Position: -320
Score: 3.8297
Sequence: ATGTAACAGTATCGTTCCAC
Position: -236
Score: 4.43937
Sequence: ACGTAATGATTAGTTTACAA
Locus tag: Shewana3_2778
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shewana3_2777
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -320 3.8 ATGTAACAGTATCGTTCCAC Shewana3_2778
-236 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-4
Position: -319
Score: 3.8297
Sequence: ATGTAACAGTATCGTTCCAC
Position: -235
Score: 4.43937
Sequence: ACGTAATGATTAGTTTACAA
Locus tag: Shewmr4_2604
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shewmr4_2603
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -319 3.8 ATGTAACAGTATCGTTCCAC Shewmr4_2604
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-7
Position: -319
Score: 3.8297
Sequence: ATGTAACAGTATCGTTCCAC
Position: -235
Score: 4.43937
Sequence: ACGTAATGATTAGTTTACAA
Locus tag: Shewmr7_2671
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shewmr7_2670
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -319 3.8 ATGTAACAGTATCGTTCCAC Shewmr7_2671
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp W3-18-1
Position: -352
Score: 3.94524
Sequence: ATGTAACCGTATCGTTCCAC
Position: -268
Score: 4.02177
Sequence: ACGTAATGATTAGTTTACGA
Locus tag: Sputw3181_2712
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sputw3181_2711
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -352 3.9 ATGTAACCGTATCGTTCCAC Sputw3181_2712
-268 4 ACGTAATGATTAGTTTACGA
Shewanella woodyi ATCC 51908
Position: -256
Score: 4.24974
Sequence: ATGTAACAAGAGATTGCCAC
Position: -172
Score: 4.77762
Sequence: CTGTAATTATTTATTTACAA
Locus tag: Swoo_1718
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Swoo_1719
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
hmgC-hmgB -256 4.2 ATGTAACAAGAGATTGCCAC Swoo_1718
-172 4.8 CTGTAATTATTTATTTACAA
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