Orthologous regulated operons containing ykuD gene
Regulog: | PhrR - Vibrionales |
Regulator type: | Transcription factor |
Regulator family: | MerR |
Regulation mode: | repressor |
Biological process: | Light-dependent DNA repair |
Effector: | Heat shock; Adenosylcobalamin |
Phylum: | Proteobacteria/Gamma |
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Operon | Position | Score | Sequence | Locus Tag of the First Gene |
---|---|---|---|---|
Vibrio cholerae O1 biovar eltor str. N16961 | ||||
Position: -76
Score: 6.74493 Sequence: TGTACAAAAAAAATATTTGTACA
Position: -28
Score: 5.76117 Sequence: TGTACAGAAATTTTCATTGTATA
Locus tag: VCA0055
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VCA0056
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VCA0057
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VCA0058
Name: ykuD Funciton: L,D-transpeptidase catalytic domain |
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COG3272-phrR-phr-ykuD | -76 | 6.7 | TGTACAAAAAAAATATTTGTACA | VCA0055 |
-28 | 5.8 | TGTACAGAAATTTTCATTGTATA | ||
Vibrio harveyi ATCC BAA-1116 | ||||
Position: -81
Score: 6.02085 Sequence: TGTACATTTTATTTTCTTGTACA
Position: -35
Score: 6.10088 Sequence: TATACAACAAAACATTTTGTATA
Locus tag: VIBHAR_05120
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VIBHAR_05121
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VIBHAR_05122
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VIBHAR_05123
Name: ykuD Funciton: L,D-transpeptidase catalytic domain |
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COG3272-phrR-phr-ykuD | -81 | 6 | TGTACATTTTATTTTCTTGTACA | VIBHAR_05120 |
-35 | 6.1 | TATACAACAAAACATTTTGTATA | ||
Vibrio parahaemolyticus RIMD 2210633 | ||||
Position: -83
Score: 6.4178 Sequence: TGTACAACTAATTTTCTTGTACA
Position: -37
Score: 6.20311 Sequence: TATACAACTAAACTTTTTGTATA
Locus tag: VPA1473
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VPA1472
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VPA1471
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VPA1470
Name: ykuD Funciton: L,D-transpeptidase catalytic domain |
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COG3272-phrR-phr-ykuD | -83 | 6.4 | TGTACAACTAATTTTCTTGTACA | VPA1473 |
-37 | 6.2 | TATACAACTAAACTTTTTGTATA | ||
Vibrio shilonii AK1 | ||||
Position: -78
Score: 5.61234 Sequence: TGTACAAGATAGAATTTTGTATC
Locus tag: VSAK1_17997
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VSAK1_17992
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VSAK1_17987
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VSAK1_17982
Name: ykuD Funciton: L,D-transpeptidase catalytic domain |
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COG3272-phrR-phr-ykuD | -78 | 5.6 | TGTACAAGATAGAATTTTGTATC | VSAK1_17997 |
Vibrio vulnificus CMCP6 | ||||
Position: -81
Score: 6.74493 Sequence: TGTACAAAAAAAATATTTGTACA
Position: -35
Score: 6.67285 Sequence: TGTACAAGTAATTTTTTTGTACA
Locus tag: VV21541
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VV21542
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VV21543
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VV21544
Name: ykuD Funciton: L,D-transpeptidase catalytic domain |
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COG3272-phrR-phr-ykuD | -81 | 6.7 | TGTACAAAAAAAATATTTGTACA | VV21541 |
-35 | 6.7 | TGTACAAGTAATTTTTTTGTACA |