Orthologous regulated operons containing phrR gene
| Regulog: | PhrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Light-dependent DNA repair |
| Effector: | Blue light; Adenosylcobalamin |
| Phylum: | Proteobacteria/Gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella baltica OS155 | ||||
|
Position: -70
Score: 6.39613 Sequence: TATACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.29273 Sequence: GATACAAGGAGTCGACTTATGTACA
Locus tag: Sbal_3056
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Sbal_3055
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Sbal_3054
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Sbal_3053
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: Sbal_3052
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Sbal_3051
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Sbal_3050
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Sbal_3049
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Sbal_3048
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: Sbal_3047
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Sbal_3046
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
||||
| COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 | -70 | 6.4 | TATACAAAAACTTGATCCTTGTACA | Sbal_3056 |
| -18 | 5.3 | GATACAAGGAGTCGACTTATGTACA | ||
| Shewanella oneidensis MR-1 | ||||
|
Position: -70
Score: 6.64681 Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 4.77092 Sequence: GATACAAGGAATCTCATTATGTACA
Locus tag: SO3386
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: SO3385
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: SO3384
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: SO3383
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: SO3382
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: SO3381
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: SO3380
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: SO3379
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: SO3378
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: SO3377
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: SO3376
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
||||
| COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 | -70 | 6.6 | TGTACAAAAACTTGATCCTTGTACA | SO3386 |
| -18 | 4.8 | GATACAAGGAATCTCATTATGTACA | ||
| Shewanella putrefaciens CN-32 | ||||
|
Position: -70
Score: 6.76233 Sequence: TGTACAAAAACTTGATCTTTGTACA
Position: -18
Score: 5.50263 Sequence: TATACAAGGAGTCAGATTATGTATA
Locus tag: Sputcn32_2716
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Sputcn32_2715
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Sputcn32_2714
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Sputcn32_2713
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: Sputcn32_2712
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Sputcn32_2711
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Sputcn32_2710
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Sputcn32_2709
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Sputcn32_2708
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: Sputcn32_2707
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Sputcn32_2706
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
||||
| COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 | -70 | 6.8 | TGTACAAAAACTTGATCTTTGTACA | Sputcn32_2716 |
| -18 | 5.5 | TATACAAGGAGTCAGATTATGTATA | ||
| Shewanella sp ANA-3 | ||||
|
Position: -70
Score: 6.64681 Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.45311 Sequence: GATACAAGGAATAGCATTATGTACA
Locus tag: Shewana3_1164
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Shewana3_1165
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Shewana3_1166
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Shewana3_1167
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: Shewana3_1168
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Shewana3_1169
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Shewana3_1170
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Shewana3_1171
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Shewana3_1172
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: Shewana3_1173
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Shewana3_1174
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
||||
| COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 | -70 | 6.6 | TGTACAAAAACTTGATCCTTGTACA | Shewana3_1164 |
| -18 | 5.5 | GATACAAGGAATAGCATTATGTACA | ||
| Shewanella sp MR-4 | ||||
|
Position: -70
Score: 6.64681 Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.45311 Sequence: GATACAAGGAATAGCATTATGTACA
Locus tag: Shewmr4_1163
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Shewmr4_1164
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Shewmr4_1165
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Shewmr4_1166
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: Shewmr4_1167
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Shewmr4_1168
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Shewmr4_1169
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Shewmr4_1170
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Shewmr4_1171
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: Shewmr4_1172
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Shewmr4_1173
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
||||
| COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 | -70 | 6.6 | TGTACAAAAACTTGATCCTTGTACA | Shewmr4_1163 |
| -18 | 5.5 | GATACAAGGAATAGCATTATGTACA | ||
| Shewanella sp MR-7 | ||||
|
Position: -70
Score: 6.64681 Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.45311 Sequence: GATACAAGGAATAGCATTATGTACA
Locus tag: Shewmr7_1234
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Shewmr7_1235
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Shewmr7_1236
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Shewmr7_1237
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: Shewmr7_1238
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Shewmr7_1239
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Shewmr7_1240
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Shewmr7_1241
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Shewmr7_1242
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: Shewmr7_1243
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Shewmr7_1244
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
||||
| COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 | -70 | 6.6 | TGTACAAAAACTTGATCCTTGTACA | Shewmr7_1234 |
| -18 | 5.5 | GATACAAGGAATAGCATTATGTACA | ||
| Shewanella sp W3-18-1 | ||||
|
Position: -70
Score: 6.76233 Sequence: TGTACAAAAACTTGATCTTTGTACA
Position: -18
Score: 5.50263 Sequence: TATACAAGGAGTCAGATTATGTATA
Locus tag: Sputw3181_1296
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Sputw3181_1297
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Sputw3181_1298
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Sputw3181_1299
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: Sputw3181_1300
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Sputw3181_1301
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Sputw3181_1302
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Sputw3181_1303
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Sputw3181_1304
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: Sputw3181_1305
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Sputw3181_1306
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
||||
| COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 | -70 | 6.8 | TGTACAAAAACTTGATCTTTGTACA | Sputw3181_1296 |
| -18 | 5.5 | TATACAAGGAGTCAGATTATGTATA | ||