Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ynzC gene

Properties
Regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Built upon 206 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Anoxybacillus flavithermus WK1
Position: -404
Score: 5.17374
Sequence: ACAAACATAAGTTCGA
Position: -375
Score: 4.85554
Sequence: ACGAACAAAAGTTCTC
Position: -347
Score: 4.95739
Sequence: ACAAACAAATGTTCTA
Locus tag: Aflv_1504
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: Aflv_1503
Name: ynzC
Funciton: Hypothetical protein
Locus tag: Aflv_1502
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: Aflv_1501
Name: yneF
Funciton: Hypothetical protein
yneB-ynzC-tkt-yneF -404 5.2 ACAAACATAAGTTCGA Aflv_1504
-375 4.9 ACGAACAAAAGTTCTC
-347 5 ACAAACAAATGTTCTA
Bacillus amyloliquefaciens FZB42
Position: -426
Score: 5.08224
Sequence: ACAAACATAGGTTCGA
Position: -396
Score: 4.41726
Sequence: AGAAACGTTTGTTCGT
Position: -359
Score: 4.13148
Sequence: GCGAACAAACATTCTT
Locus tag: RBAM_017670
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: RBAM_017680
Name: ynzC
Funciton: Hypothetical protein
Locus tag: RBAM_017690
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: RBAM_017700
Name: yneE
Funciton: Hypothetical protein
Locus tag: RBAM_017710
Name: yneF
Funciton: Hypothetical protein
yneB-ynzC-tkt-yneE-yneF -426 5.1 ACAAACATAGGTTCGA RBAM_017670
-396 4.4 AGAAACGTTTGTTCGT
-359 4.1 GCGAACAAACATTCTT
Bacillus cereus ATCC 14579
Position: -75
Score: 5.17374
Sequence: ACAAACATAAGTTCGA
Locus tag: BC3689
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: BC3688
Name: ynzC
Funciton: Hypothetical protein
yneB-ynzC -75 5.2 ACAAACATAAGTTCGA BC3689
Bacillus halodurans C-125
Position: -317
Score: 4.60306
Sequence: GCAAACATAAGTTCTA
Position: -288
Score: 4.8289
Sequence: ACAAACAAGTGTTCTT
Locus tag: BH2354
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: BH2353
Name: ynzC
Funciton: Hypothetical protein
Locus tag: BH2352
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
yneB-ynzC-tkt -317 4.6 GCAAACATAAGTTCTA BH2354
-288 4.8 ACAAACAAGTGTTCTT
Bacillus licheniformis DSM 13
Position: -425
Score: 5.08224
Sequence: ACAAACATAGGTTCGA
Position: -395
Score: 4.88182
Sequence: AGAAACATTTGTTCGT
Position: -357
Score: 4.04074
Sequence: CCGAACAAACATTCTG
Locus tag: BLi02034
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: BLi02035
Name: ynzC
Funciton: Hypothetical protein
Locus tag: BLi02036
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: BLi02037
Name: yneE
Funciton: Hypothetical protein
Locus tag: BLi02038
Name: yneF
Funciton: Hypothetical protein
yneB-ynzC-tkt-yneE-yneF -425 5.1 ACAAACATAGGTTCGA BLi02034
-395 4.9 AGAAACATTTGTTCGT
-357 4 CCGAACAAACATTCTG
Bacillus pumilus SAFR-032
Position: -431
Score: 5.08224
Sequence: ACAAACATAGGTTCGA
Position: -401
Score: 4.41726
Sequence: AGAAACGTTTGTTCGT
Position: -362
Score: 4.04826
Sequence: ACGAACACACATTCTA
Locus tag: BPUM_1688
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: BPUM_1689
Name: ynzC
Funciton: Hypothetical protein
Locus tag: BPUM_1690
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: BPUM_1691
Name: yneE
Funciton: Hypothetical protein
Locus tag: BPUM_1692
Name: yneF
Funciton: Hypothetical protein
yneB-ynzC-tkt-yneE-yneF -431 5.1 ACAAACATAGGTTCGA BPUM_1688
-401 4.4 AGAAACGTTTGTTCGT
-362 4 ACGAACACACATTCTA
Bacillus subtilis subsp. subtilis str. 168
Position: -428
Score: 5.08224
Sequence: ACAAACATAGGTTCGA
Position: -399
Score: 4.41726
Sequence: AGAAACGTTTGTTCGT
Locus tag: BSU17870
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: BSU17880
Name: ynzC
Funciton: Hypothetical protein
Locus tag: BSU17890
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: BSU17900
Name: yneE
Funciton: Hypothetical protein
Locus tag: BSU17910
Name: yneF
Funciton: Hypothetical protein
yneB-ynzC-tkt-yneE-yneF -428 5.1 ACAAACATAGGTTCGA BSU17870
-399 4.4 AGAAACGTTTGTTCGT
Geobacillus kaustophilus HTA426
Position: -419
Score: 5.08224
Sequence: ACAAACATAGGTTCGA
Position: -390
Score: 4.63234
Sequence: ACAAACAAATGTTCCT
Position: -357
Score: 3.99384
Sequence: GCGAACAAACATTCTA
Locus tag: GK1330
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: GK1331
Name: ynzC
Funciton: Hypothetical protein
Locus tag: GK1332
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: GK1333
Name: yneE
Funciton: Hypothetical protein
Locus tag: GK1334
Name: yneF
Funciton: Hypothetical protein
yneB-ynzC-tkt-yneE-yneF -419 5.1 ACAAACATAGGTTCGA GK1330
-390 4.6 ACAAACAAATGTTCCT
-357 4 GCGAACAAACATTCTA
Oceanobacillus iheyensis HTE831
Position: -227
Score: 3.88724
Sequence: GCAAACACTCGTTCTA
Position: -198
Score: 4.55455
Sequence: AAGATCATATGTTCGG
Position: -163
Score: 4.65085
Sequence: AAGAACAATTGTTCTG
Locus tag: OB1670
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: OB1671
Name: ynzC
Funciton: Hypothetical protein
Locus tag: OB1672
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: OB1673
Name: yneE
Funciton: Hypothetical protein
Locus tag: OB1674
Name: OB1674
Funciton: Hypothetical protein
Locus tag: OB1675
Name: OB1675
Funciton: Methyl-accepting chemotaxis protein
Locus tag: OB1676
Name: yneF
Funciton: Hypothetical protein
yneB-ynzC-tkt-yneE-OB1674-OB1675-yneF -227 3.9 GCAAACACTCGTTCTA OB1670
-198 4.6 AAGATCATATGTTCGG
-163 4.7 AAGAACAATTGTTCTG
Paenibacillus sp. JDR-2
Position: -129
Score: 4.24033
Sequence: TAGAACCGGAGTTCGT
Position: -113
Score: 5.11284
Sequence: ACAAACATAAGTTCTT
Position: -97
Score: 4.76189
Sequence: AAAAACAAAAGTTCGC
Position: -67
Score: 4.95007
Sequence: GCAAACATTTGTTCGT
Position: -28
Score: 4.71499
Sequence: CAGAACAAACGTTCGG
Locus tag: Pjdr2_2622
Name: Pjdr2_2622
Funciton: Peptidoglycan-binding protein
Locus tag: Pjdr2_2623
Name: ynzC
Funciton: Hypothetical protein
Pjdr2_2622-ynzC -129 4.2 TAGAACCGGAGTTCGT Pjdr2_2622
-113 5.1 ACAAACATAAGTTCTT
-97 4.8 AAAAACAAAAGTTCGC
-67 5 GCAAACATTTGTTCGT
-28 4.7 CAGAACAAACGTTCGG
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