Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nirK gene

Properties
Regulog: FnrN/FixK/AadR - Rhizobiales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Phylum: Proteobacteria/Alpha
Built upon 192 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Agrobacterium tumefaciens str. C58 (Cereon)
Position: -96
Score: 4.27494
Sequence: AGTTTGTTCCATCTCAAATT
Locus tag: Atu4382
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: Atu4381
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -96 4.3 AGTTTGTTCCATCTCAAATT Atu4382
Bradyrhizobium japonicum USDA 110
Position: -77
Score: 4.02179
Sequence: AGCTTGTTGCAGCGCAAACA
Locus tag: blr7089
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: blr7090
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -77 4 AGCTTGTTGCAGCGCAAACA blr7089
Bradyrhizobium sp. BTAi1
Position: -84
Score: 3.86077
Sequence: TGCTTGTTGCAGCACAAACA
Locus tag: BBta_6826
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: BBta_6827
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -84 3.9 TGCTTGTTGCAGCACAAACA BBta_6826
Brucella melitensis 16M
Position: -188
Score: 3.70133
Sequence: CCTTTGTCTTAACGCAAACA
Position: -95
Score: 4.63208
Sequence: ATATTGATTGCGGTCAAGGA
Locus tag: BMEII0988
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: BMEII0987
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: BMEII0986
Name: nnrR
Funciton: Nitric oxide stress response transcriptional regulator NnrR, Crp family
nirK-nirV-nnrR -188 3.7 CCTTTGTCTTAACGCAAACA BMEII0988
-95 4.6 ATATTGATTGCGGTCAAGGA
Mesorhizobium sp. BNC1
Position: -176
Score: 4.73703
Sequence: ACTTTGATCCAGCGCAACGT
Position: -83
Score: 4.31592
Sequence: TATTTGCGCCAGAGCAAAGA
Locus tag: Meso_2243
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
nirK -176 4.7 ACTTTGATCCAGCGCAACGT Meso_2243
-83 4.3 TATTTGCGCCAGAGCAAAGA
Rhizobium etli CFN 42
Position: -118
Score: 3.65757
Sequence: ACTTTGTGCCGGCACAAACA
Position: -95
Score: 4.498
Sequence: AGTTTGCGCCACGTCAAAGA
Locus tag: RHE_PF00525
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: RHE_PF00526
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: RHE_PF00527
Name: nnrR
Funciton: Nitric oxide stress response transcriptional regulator NnrR, Crp family
Locus tag: RHE_PF00528
Name: nnrU
Funciton: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
nirK-nirV-nnrR-nnrU -118 3.7 ACTTTGTGCCGGCACAAACA RHE_PF00525
-95 4.5 AGTTTGCGCCACGTCAAAGA
Rhizobium sp. NGR234
Position: -196
Score: 3.63829
Sequence: TCTTTGACAATTGGCAAAGA
Position: -92
Score: 4.45581
Sequence: TATTTGTTCCACCTCAAAGA
Locus tag: NGR_c09950
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: NGR_c09960
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: NGR_c09970
Name: nnrR
Funciton: Nitric oxide stress response transcriptional regulator NnrR, Crp family
nirK-nirV-nnrR -196 3.6 TCTTTGACAATTGGCAAAGA NGR_c09950
-92 4.5 TATTTGTTCCACCTCAAAGA
Rhodopseudomonas palustris CGA009
Position: -85
Score: 3.90231
Sequence: AGCTTGTGCTGGGACAAACA
Locus tag: RPA4145
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: RPA4146
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -85 3.9 AGCTTGTGCTGGGACAAACA RPA4145
Sinorhizobium meliloti 1021
Position: -192
Score: 3.63829
Sequence: TCTTTGACAATTGGCAAAGA
Position: -91
Score: 4.5021
Sequence: TGTTTGTTCCACCTCAAAGA
Locus tag: SMa1250
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: SMa1247
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -192 3.6 TCTTTGACAATTGGCAAAGA SMa1250
-91 4.5 TGTTTGTTCCACCTCAAAGA
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