Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing paaB gene

Properties
Regulog: PaaR - Micrococcineae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Actinobacteria
Built upon 38 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Arthrobacter aurescens TC1
Position: -36
Score: 5.5853
Sequence: TCTGAACGAACGGTCGGTAATT
Locus tag: AAur_3226
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: AAur_3225
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: AAur_3224
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: AAur_3223
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: AAur_3222
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: AAur_3221
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaG -36 5.6 TCTGAACGAACGGTCGGTAATT AAur_3226
Arthrobacter chlorophenolicus A6
Position: -64
Score: 5.48047
Sequence: CCTGAACGAACGGTCGGTAAAT
Locus tag: Achl_2964
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Achl_2963
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Achl_2962
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Achl_2961
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Achl_2960
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaA-paaB-paaC-paaD-paaE -64 5.5 CCTGAACGAACGGTCGGTAAAT Achl_2964
Arthrobacter sp. FB24
Position: -49
Score: 5.56542
Sequence: CCTGAACGAACGGTCGGTAATT
Locus tag: Arth_3218
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Arth_3217
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Arth_3216
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Arth_3215
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Arth_3214
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Arth_3213
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaG -49 5.6 CCTGAACGAACGGTCGGTAATT Arth_3218
Brevibacterium linens BL2
Position: -101
Score: 4.20209
Sequence: ACAGAACAAATGGTCAGTAAAT
Locus tag: BlinB01000722
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: BlinB01000723
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: BlinB01000724
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: BlinB01000725
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: BlinB01000726
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: BlinB01000727
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: BlinB01000728
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: BlinB01000729
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: BlinB01000730
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaJ-paaF-paaH-paaG -101 4.2 ACAGAACAAATGGTCAGTAAAT BlinB01000722
Kocuria rhizophila DC2201
Position: -210
Score: 5.01457
Sequence: ATTTTCAGAACGATCGGTCAGT
Position: -67
Score: 4.80947
Sequence: TCTGAACGAGCGGTCAGTTATT
Locus tag: KRH_02150
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: KRH_02140
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: KRH_02130
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: KRH_02120
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: KRH_02110
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaA-paaB-paaC-paaD-paaE -210 5 ATTTTCAGAACGATCGGTCAGT KRH_02150
-67 4.8 TCTGAACGAGCGGTCAGTTATT
Renibacterium salmoninarum ATCC 33209
Position: -66
Score: 4.9379
Sequence: ATATACTGAACGAACGGTCAGT
Position: -62
Score: 5.38967
Sequence: ACTGAACGAACGGTCAGTAATT
Locus tag: RSal33209_2662
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: RSal33209_2661
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: RSal33209_2660
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: RSal33209_2659
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: RSal33209_2658
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: RSal33209_2657
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaG -66 4.9 ATATACTGAACGAACGGTCAGT RSal33209_2662
-62 5.4 ACTGAACGAACGGTCAGTAATT