Orthologous regulated operons containing kdgD gene
| Regulog: | GguR - Comamonadaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||||
|
Position: -38
Score: 4.76219 Sequence: CAGTTGTATGATGACGT
Position: -31
Score: 4.5835 Sequence: ATGATGACGTACAACAT
Locus tag: Aave_2588
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Aave_2587
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
||||
| tctC1-kdgD | -38 | 4.8 | CAGTTGTATGATGACGT | Aave_2588 |
| -31 | 4.6 | ATGATGACGTACAACAT | ||
| Acidovorax sp. JS42 | ||||
|
Position: -51
Score: 5.08072 Sequence: ATGTTGTACGATGACGT
Position: -44
Score: 4.27912 Sequence: ACGATGACGTATAACTT
Locus tag: Ajs_1994
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Ajs_1993
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Ajs_1992
Name: tctC3 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Ajs_1991
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Ajs_1990
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40) |
||||
| tctC1-kdgD-tctC3-serA-gudD | -51 | 5.1 | ATGTTGTACGATGACGT | Ajs_1994 |
| -44 | 4.3 | ACGATGACGTATAACTT | ||
| Comamonas testosteroni KF-1 | ||||
|
Position: -41
Score: 4.4101 Sequence: TAGTTGTATGATGACTG
Locus tag: CtesDRAFT_4120
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: CtesDRAFT_4121
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: CtesDRAFT_4122
Name: tctC3 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: CtesDRAFT_4123
Name: null Funciton: Uncharacterized protein UPF0065
Locus tag: CtesDRAFT_4211
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: CtesDRAFT_4124
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: CtesDRAFT_4125
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
||||
| tctC1-kdgD-tctC3-CtesDRAFT_4123-serA-gudD-kgsD | -41 | 4.4 | TAGTTGTATGATGACTG | CtesDRAFT_4120 |
| Delftia acidovorans SPH-1 | ||||
|
Position: -43
Score: 5.32743 Sequence: CAGTTGTACGACAACTG
Locus tag: Daci_0252
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Daci_0251
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Daci_0250
Name: tctC3 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Daci_0249
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Daci_0248
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Daci_0247
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
||||
| tctC1-kdgD-tctC3-serA-gudD-kgsD | -43 | 5.3 | CAGTTGTACGACAACTG | Daci_0252 |
| Leptothrix cholodnii SP-6 | ||||
|
Position: -65
Score: 5.13193 Sequence: ATGTTGTACGATGACAT
Position: -58
Score: 4.38503 Sequence: ACGATGACATACAACAT
Locus tag: Lcho_1117
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Lcho_1118
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Lcho_1119
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Lcho_1120
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Lcho_1121
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Lcho_1122
Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Lcho_1123
Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
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| kdgD-gudD-kgsD-tctC1-serA-garL-garR | -65 | 5.1 | ATGTTGTACGATGACAT | Lcho_1117 |
| -58 | 4.4 | ACGATGACATACAACAT | ||
| Polaromonas naphthalenivorans CJ2 | ||||
|
Position: -98
Score: 4.72113 Sequence: GAGTCATCAGACAACGT
Locus tag: Pnap_1591
Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Pnap_1592
Name: uxuL1 Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Pnap_1593
Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Pnap_1594
Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Pnap_1595
Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Pnap_1596
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Pnap_1597
Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Pnap_1598
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Pnap_1599
Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Pnap_1600
Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Pnap_1601
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
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| udh-uxuL1-uxuP-uxuQ-uxuM-kdgD-garD-kgsD-garL-garR-tctC1 | -98 | 4.7 | GAGTCATCAGACAACGT | Pnap_1591 |
| Variovorax paradoxus S110 | ||||
|
Position: -44
Score: 4.55736 Sequence: TAGTTGTACGATGACTG
Position: -37
Score: 4.18418 Sequence: ACGATGACTGACAACAC
Locus tag: Vapar_1728
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Vapar_1729
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Vapar_1730
Name: null Funciton: hypothetical protein
Locus tag: Vapar_1731
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40) |
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| tctC1-kdgD-Vapar_1730-gudD | -44 | 4.6 | TAGTTGTACGATGACTG | Vapar_1728 |
| -37 | 4.2 | ACGATGACTGACAACAC | ||