Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing garD gene

Properties
Regulog: GguR - Comamonadaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization
Effector:
Phylum: Proteobacteria/Beta
Built upon 32 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Acidovorax avenae subsp. citrulli AAC00-1
Position: -17
Score: 5.31837
Sequence: GCGTTGTACGACAACAT
Locus tag: Aave_2590
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Aave_2591
Name: uxuL1
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Aave_2592
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Aave_2593
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Aave_2594
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Aave_2595
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Aave_2596
Name: uxuL2
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Aave_2597
Name: tctC2
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
udh-uxuL1-uxuP-uxuQ-uxuM-garD-uxuL2-tctC2 -17 5.3 GCGTTGTACGACAACAT Aave_2590
Acidovorax sp. JS42
Position: -74
Score: 5.32938
Sequence: ACGTTATCAGACAACAT
Locus tag: Ajs_1996
Name: gudD2
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Ajs_1997
Name: tctC2
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Ajs_1998
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Ajs_1999
Name: uxuL2
Funciton: Predicted glucuronolactone/galactarolactone lactonase
gudD2-tctC2-garD-uxuL2 -74 5.3 ACGTTATCAGACAACAT Ajs_1996
Comamonas testosteroni KF-1
Position: -80
Score: 5.49871
Sequence: CAGTTGTACGACAACAT
Locus tag: CtesDRAFT_4118
Name: gudD2
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: CtesDRAFT_4117
Name: tctC2
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: CtesDRAFT_4116
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
gudD2-tctC2-garD -80 5.5 CAGTTGTACGACAACAT CtesDRAFT_4118
Delftia acidovorans SPH-1
Position: -73
Score: 5.60729
Sequence: AAGTTGTACGACAACGT
Locus tag: Daci_0254
Name: gudD2
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Daci_0255
Name: tctC2
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Daci_0256
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Daci_0257
Name: uxuL2
Funciton: Predicted glucuronolactone/galactarolactone lactonase
gudD2-tctC2-garD-uxuL2 -73 5.6 AAGTTGTACGACAACGT Daci_0254
Leptothrix cholodnii SP-6
Position: -217
Score: 4.14048
Sequence: TTGTTGTACGTCATCGT
Position: -210
Score: 4.82755
Sequence: ACGTCATCGTATAACTT
Position: -66
Score: 5.66998
Sequence: ATGTTGTACGACAACAT
Locus tag: Lcho_2484
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
garD -217 4.1 TTGTTGTACGTCATCGT Lcho_2484
-210 4.8 ACGTCATCGTATAACTT
-66 5.7 ATGTTGTACGACAACAT
Polaromonas naphthalenivorans CJ2
Position: -98
Score: 4.72113
Sequence: GAGTCATCAGACAACGT
Locus tag: Pnap_1591
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Pnap_1592
Name: uxuL1
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Pnap_1593
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Pnap_1594
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Pnap_1595
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Pnap_1596
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Pnap_1597
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Pnap_1598
Name: kgsD
Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Pnap_1599
Name: garL
Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Pnap_1600
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Pnap_1601
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
udh-uxuL1-uxuP-uxuQ-uxuM-kdgD-garD-kgsD-garL-garR-tctC1 -98 4.7 GAGTCATCAGACAACGT Pnap_1591
Polaromonas sp. JS666
Position: -97
Score: 4.61422
Sequence: CAGTCATCAGACAACCT
Locus tag: Bpro_3109
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Bpro_3108
Name: uxuL1
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Bpro_3107
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Bpro_3106
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Bpro_3105
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Bpro_3104
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Bpro_3103
Name: garL
Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Bpro_3102
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Bpro_3101
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Bpro_3100
Name: aldE
Funciton: Aldose 1-epimerase (EC 5.1.3.3)
udh-uxuL1-uxuP-uxuQ-uxuM-garD-garL-garR-tctC1-aldE -97 4.6 CAGTCATCAGACAACCT Bpro_3109
Variovorax paradoxus S110
Position: -39
Score: 5.10689
Sequence: TAGTTGTACGACAACAG
Locus tag: Vapar_1726
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Vapar_1725
Name: uxuL1
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Vapar_1724
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Vapar_1723
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Vapar_1722
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Vapar_1721
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Vapar_1720
Name: null
Funciton: short-chain dehydrogenase/reductase SDR
Locus tag: Vapar_1719
Name: null
Funciton: hypothetical protein
Locus tag: Vapar_1718
Name: uxuF
Funciton: Predicted uronate lactonase, PF10282 family
Locus tag: Vapar_1717
Name: tctC2
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
udh-uxuL1-uxuP-uxuQ-uxuM-garD-Vapar_1720-Vapar_1719-uxuF-tctC2 -39 5.1 TAGTTGTACGACAACAG Vapar_1726
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