Orthologous regulated operons containing garR gene
| Regulog: | GguR - Comamonadaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Leptothrix cholodnii SP-6 | ||||
|
Position: -65
Score: 5.13193 Sequence: ATGTTGTACGATGACAT
Position: -58
Score: 4.38503 Sequence: ACGATGACATACAACAT
Locus tag: Lcho_1117
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Lcho_1118
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Lcho_1119
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Lcho_1120
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Lcho_1121
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Lcho_1122
Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Lcho_1123
Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
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| kdgD-gudD-kgsD-tctC1-serA-garL-garR | -65 | 5.1 | ATGTTGTACGATGACAT | Lcho_1117 |
| -58 | 4.4 | ACGATGACATACAACAT | ||
| Methylibium petroleiphilum PM1 | ||||
|
Position: -84
Score: 5.08072 Sequence: ATGTTGTACGATGACGT
Position: -77
Score: 4.12899 Sequence: ACGATGACGTACAACTA
Locus tag: Mpe_A0972
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Mpe_A0973
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Mpe_A0974
Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Mpe_A0975
Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Mpe_A0976
Name: garK Funciton: D-glycerate 2-kinase (EC 2.7.1.-) |
||||
| tctC1-serA-garL-garR-garK | -84 | 5.1 | ATGTTGTACGATGACGT | Mpe_A0972 |
| -77 | 4.1 | ACGATGACGTACAACTA | ||
| Polaromonas naphthalenivorans CJ2 | ||||
|
Position: -98
Score: 4.72113 Sequence: GAGTCATCAGACAACGT
Locus tag: Pnap_1591
Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Pnap_1592
Name: uxuL1 Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Pnap_1593
Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Pnap_1594
Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Pnap_1595
Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Pnap_1596
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Pnap_1597
Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Pnap_1598
Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Pnap_1599
Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Pnap_1600
Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Pnap_1601
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
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| udh-uxuL1-uxuP-uxuQ-uxuM-kdgD-garD-kgsD-garL-garR-tctC1 | -98 | 4.7 | GAGTCATCAGACAACGT | Pnap_1591 |
| Polaromonas sp. JS666 | ||||
|
Position: -97
Score: 4.61422 Sequence: CAGTCATCAGACAACCT
Locus tag: Bpro_3109
Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Bpro_3108
Name: uxuL1 Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Bpro_3107
Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Bpro_3106
Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Bpro_3105
Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Bpro_3104
Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Bpro_3103
Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Bpro_3102
Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Bpro_3101
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Bpro_3100
Name: aldE Funciton: Aldose 1-epimerase (EC 5.1.3.3) |
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| udh-uxuL1-uxuP-uxuQ-uxuM-garD-garL-garR-tctC1-aldE | -97 | 4.6 | CAGTCATCAGACAACCT | Bpro_3109 |