Orthologous regulated operons containing sdhC gene
| Regulog: | SdhR - Various betaproteobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Azoarcus sp. EbN1 | ||||
|
Position: -68
Score: 7.05826 Sequence: TCTGGTGTCTTATATAAGACATGAGA
Locus tag: ebA6693
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: ebD20
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: ebB235
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: ebA6690
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: ebA6689
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: ebA6688
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: ebA6687
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: ebA6685
Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: ebA6684
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: ebA6683
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
||||
| sdhR-sdhC-sdhD-sdhA-sdhB-COG2938-gltA-odhA-sucB-lpdA | -68 | 7.1 | TCTGGTGTCTTATATAAGACATGAGA | ebA6693 |
| Chromobacterium violaceum ATCC 12472 | ||||
|
Position: 77
Score: 6.99689 Sequence: TCTTATGTCTTATATAAGACTTATCT
Locus tag: CV1063
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: CV1064
Name: null Funciton: hypothetical protein
Locus tag: CV1065
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: CV1066
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: CV1067
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: CV1068
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: CV1069
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: CV1070
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: CV1071
Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: CV1072
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: CV1073
Name: null Funciton: hypothetical protein
Locus tag: CV1074
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
Locus tag: CV1075
Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: CV1076
Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
||||
| sdhR-CV1064-sdhC-sdhD-sdhA-sdhB-COG2938-gltA-odhA-sucB-CV1073-lpdA-sucC-sucD | 77 | 7 | TCTTATGTCTTATATAAGACTTATCT | CV1063 |
| Dechloromonas aromatica RCB | ||||
|
Position: -66
Score: 6.98049 Sequence: TCATATGTCTTATATAAGACAACTTT
Locus tag: Daro_2866
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Daro_2865
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Daro_2864
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: Daro_2863
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Daro_2862
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Daro_2861
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Daro_2860
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: Daro_2859
Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Daro_2858
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Daro_2857
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
||||
| sdhR-sdhC-sdhD-sdhA-sdhB-COG2938-gltA-odhA-sucB-lpdA | -66 | 7 | TCATATGTCTTATATAAGACAACTTT | Daro_2866 |
| Methylophilales bacterium HTCC2181 | ||||
|
Position: -201
Score: 5.63336 Sequence: TATTAAGTCTTATATAAGAGTAAAAA
Position: -68
Score: 5.54061 Sequence: TTTTAACTCTTATATAAGATATAGAA
Locus tag: MB2181_04040
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: MB2181_04035
Name: MB2181_04035 Funciton: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
Locus tag: MB2181_04030
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: MB2181_04025
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: MB2181_04020
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: MB2181_04015
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: MB2181_04010
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: MB2181_04005
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: MB2181_04000
Name: MB2181_04000 Funciton: acetyl-coenzyme A synthetase family protein
Locus tag: MB2181_03995
Name: fumA Funciton: Fumarate hydratase class I (EC 4.2.1.2) |
||||
| sdhR-MB2181_04035-sdhC-sdhD-sdhA-sdhB-COG2938-citE-MB2181_04000-fumA | -201 | 5.6 | TATTAAGTCTTATATAAGAGTAAAAA | MB2181_04040 |
| -68 | 5.5 | TTTTAACTCTTATATAAGATATAGAA | ||
| Methylotenera mobilis JLW8 | ||||
|
Position: -115
Score: 7.36725 Sequence: TCTTATGTCTTATATAAGATATAAAA
Locus tag: Mmol_0754
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Mmol_0755
Name: null Funciton: hypothetical protein
Locus tag: Mmol_0756
Name: MB2181_04035 Funciton: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
Locus tag: Mmol_0757
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Mmol_0758
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: Mmol_0759
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Mmol_0760
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Mmol_0761
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Mmol_0762
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Mmol_0763
Name: MB2181_04000 Funciton: acetyl-coenzyme A synthetase family protein
Locus tag: Mmol_0764
Name: fumA Funciton: Fumarate hydratase class I (EC 4.2.1.2)
Locus tag: Mmol_0765
Name: null Funciton: hypothetical protein
Locus tag: Mmol_0766
Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3) |
||||
| sdhR-Mmol_0755-MB2181_04035-sdhC-sdhD-sdhA-sdhB-COG2938-citE-MB2181_04000-fumA-Mmol_0765-acnB | -115 | 7.4 | TCTTATGTCTTATATAAGATATAAAA | Mmol_0754 |
| Thauera sp. MZ1T | ||||
|
Position: -68
Score: 7.34179 Sequence: TCTTATATCTTATATAAGACACAAGA
Locus tag: Tmz1t_2551
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Tmz1t_2550
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Tmz1t_2549
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: Tmz1t_2548
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Tmz1t_2547
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Tmz1t_2546
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Tmz1t_2545
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: Tmz1t_2544
Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Tmz1t_2543
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Tmz1t_2542
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
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| sdhR-sdhC-sdhD-sdhA-sdhB-COG2938-gltA-odhA-sucB-lpdA | -68 | 7.3 | TCTTATATCTTATATAAGACACAAGA | Tmz1t_2551 |