Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing acnB gene

Properties
Regulog: SdhR - Comamonadaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Phylum: Proteobacteria/Beta
Built upon 36 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Acidovorax avenae subsp. citrulli AAC00-1
Position: -156
Score: 7.03683
Sequence: CATCATATCTTATATAAGACATAAGA
Locus tag: Aave_2206
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Aave_2207
Name: tam
Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
Locus tag: Aave_2208
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Aave_2209
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Aave_2210
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-tam-citE-Aave_2209-acnB -156 7 CATCATATCTTATATAAGACATAAGA Aave_2206
Acidovorax sp. JS42
Position: -91
Score: 7.23905
Sequence: GATCATATCTTATATAAGACATAAGA
Locus tag: Ajs_2791
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Ajs_2790
Name: tam
Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
Locus tag: Ajs_2789
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Ajs_2788
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Ajs_2787
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-tam-citE-Aave_2209-acnB -91 7.2 GATCATATCTTATATAAGACATAAGA Ajs_2791
Comamonas testosteroni KF-1
Position: -155
Score: 7.23905
Sequence: GATCATATCTTATATAAGACATAAGA
Locus tag: CtesDRAFT_0622
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: CtesDRAFT_0623
Name: tam
Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
Locus tag: CtesDRAFT_0624
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: CtesDRAFT_0625
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: CtesDRAFT_0626
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-tam-citE-Aave_2209-acnB -155 7.2 GATCATATCTTATATAAGACATAAGA CtesDRAFT_0622
Delftia acidovorans SPH-1
Position: -157
Score: 7.23905
Sequence: GATCATATCTTATATAAGACATAAGA
Locus tag: Daci_2429
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Daci_2430
Name: tam
Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
Locus tag: Daci_2431
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Daci_2432
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Daci_2433
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-tam-citE-Aave_2209-acnB -157 7.2 GATCATATCTTATATAAGACATAAGA Daci_2429
Leptothrix cholodnii SP-6
Position: -114
Score: 6.12548
Sequence: TGGCAAGTCTTATATAAGACATAAAA
Locus tag: Lcho_2711
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
acnB -114 6.1 TGGCAAGTCTTATATAAGACATAAAA Lcho_2711
Polaromonas naphthalenivorans CJ2
Position: -202
Score: 7.3504
Sequence: AATCATATCTTATATAAGACATAAGA
Locus tag: Pnap_3030
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Pnap_3029
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Pnap_3028
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Pnap_3027
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-citE-Aave_2209-acnB -202 7.4 AATCATATCTTATATAAGACATAAGA Pnap_3030
Polaromonas sp. JS666
Position: -239
Score: 7.4713
Sequence: TATCATATCTTATATAAGACATAAGA
Locus tag: Bpro_3598
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Bpro_3597
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Bpro_3596
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Bpro_3595
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-citE-Aave_2209-acnB -239 7.5 TATCATATCTTATATAAGACATAAGA Bpro_3598
Rhodoferax ferrireducens DSM 15236
Position: -138
Score: 6.72716
Sequence: CATCTTATCTTATATAAGACATAAGA
Locus tag: Rfer_1803
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Rfer_1804
Name: null
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Rfer_1805
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Rfer_1806
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-Rfer_1804-Aave_2209-acnB -138 6.7 CATCTTATCTTATATAAGACATAAGA Rfer_1803
Variovorax paradoxus S110
Position: -151
Score: 6.80457
Sequence: GAGCATATCTTATATAAGACATAAGA
Locus tag: Vapar_1432
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Vapar_1433
Name: tam
Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
Locus tag: Vapar_1434
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Vapar_1435
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Vapar_1436
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-tam-citE-Aave_2209-acnB -151 6.8 GAGCATATCTTATATAAGACATAAGA Vapar_1432
Verminephrobacter eiseniae EF01-2
Position: -199
Score: 7.23905
Sequence: GATCATATCTTATATAAGACATAAGA
Locus tag: Veis_4356
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Veis_4357
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Veis_4358
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh-Aave_2209-acnB -199 7.2 GATCATATCTTATATAAGACATAAGA Veis_4356
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