Orthologous regulated operons containing rbsD gene
| Regulog: | RbsR - Psychromonadaceae/Aeromonadales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | ||||
|
Position: -72
Score: 5.42914 Sequence: TGACGCAACCGGTTGCGTAA
Locus tag: AHA_2309
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: AHA_2310
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: AHA_2311
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: AHA_2312
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: AHA_2313
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: AHA_2314
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -72 | 5.4 | TGACGCAACCGGTTGCGTAA | AHA_2309 |
| Aeromonas salmonicida subsp. salmonicida A449 | ||||
|
Position: -75
Score: 5.42914 Sequence: TGACGCAACCGGTTGCGTAA
Locus tag: ASA_1971
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1) |
||||
| rbsD | -75 | 5.4 | TGACGCAACCGGTTGCGTAA | ASA_1971 |
| Moritella sp. PE36 | ||||
|
Position: -94
Score: 5.60385 Sequence: CCATCGAAACGTTTGCGCAA
Position: -82
Score: 5.60385 Sequence: TTGCGCAAACGTTTCGATGG
Locus tag: PE36_05828
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PE36_05823
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PE36_05818
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PE36_05813
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PE36_05808
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PE36_05803
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -94 | 5.6 | CCATCGAAACGTTTGCGCAA | PE36_05828 |
| -82 | 5.6 | TTGCGCAAACGTTTCGATGG | ||
| Psychromonas ingrahamii 37 | ||||
|
Position: -107
Score: 5.60385 Sequence: CCATCGAAACGTTTGCGCAA
Locus tag: Ping_0340
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Ping_0341
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Ping_0342
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Ping_0343
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Ping_0344
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Ping_0345
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -107 | 5.6 | CCATCGAAACGTTTGCGCAA | Ping_0340 |
| Psychromonas sp. CNPT3 | ||||
|
Position: -94
Score: 5.72743 Sequence: TTATCGAAACGTTTGCGCAA
Position: -82
Score: 5.60385 Sequence: TTGCGCAAACGTTTCGATGG
Locus tag: PCNPT3_07068
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PCNPT3_07073
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PCNPT3_07078
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PCNPT3_07083
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PCNPT3_07088
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PCNPT3_07093
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
||||
| rbsD-rbsA-rbsC-rbsB-rbsK-rbsR | -94 | 5.7 | TTATCGAAACGTTTGCGCAA | PCNPT3_07068 |
| -82 | 5.6 | TTGCGCAAACGTTTCGATGG | ||