Orthologous regulated operons containing yscR gene
| Regulog: | RpoN - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Sigma54 |
| Regulation mode: | |
| Biological process: | Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
| Effector: | |
| Phylum: | Proteobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Desulfovibrio vulgaris Hildenborough | ||||
|
Position: -62
Score: 4.64067 Sequence: CATGGCATACTTGCTGCTA
Locus tag: DVUA203
Name: DVUA203 Funciton: hypothetical protein
Locus tag: DVUA0109
Name: null Funciton: Type III secretion chaperone protein for YopD (SycD)
Locus tag: DVUA0110
Name: null Funciton: Type III secretion host injection protein (YopB)
Locus tag: DVUA0111
Name: null Funciton: Type III secretion host injection and negative regulator protein (YopD)
Locus tag: DVUA201
Name: DVUA201 (DVUA0111.1) Funciton: Tir chaperone family protein
Locus tag: DVUA0112
Name: null Funciton: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
Locus tag: DVUA0113
Name: null Funciton: Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
Locus tag: DVUA0114
Name: null Funciton: hypothetical protein
Locus tag: DVUA0115
Name: null Funciton: Type III secretion system protein, YscF family
Locus tag: DVUA0116
Name: null Funciton: hypothetical protein
Locus tag: DORF2111
Name: DORF2111 Funciton: null
Locus tag: DVUA0117
Name: escJ Funciton: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
Locus tag: DVUA200
Name: DVUA200 Funciton: null
Locus tag: DVUA0118
Name: sctL Funciton: type III secretion protein, YopL family putative type III secretion protein
Locus tag: DVUA0119
Name: sctN Funciton: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
Locus tag: DVUA0119.1
Name: DVUA0119.1 Funciton: null
Locus tag: DVUA0120
Name: null Funciton: HpaP protein; Type III secretion protein (YscP)
Locus tag: DVUA0121
Name: null Funciton: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)
Locus tag: DVUA0122
Name: yscR Funciton: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
Locus tag: DVUA0123
Name: null Funciton: anti-anti-sigma factor
Locus tag: DVUA0124
Name: rsbW Funciton: putative anti-sigma regulatory factor, serine/threonine protein kinase
Locus tag: DVUA0125
Name: slt Funciton: transglycosylase, SLT family |
||||
| DVUA203-DVUA0109-DVUA0110-DVUA0111-DVUA201 (DVUA0111.1)-DVUA0112-DVUA0113-DVUA0114-DVUA0115-DVUA0116-DORF2111-escJ-DVUA200-sctL-sctN-DVUA0119.1-DVUA0120-DVUA0121-yscR-DVUA0123-rsbW-slt | -62 | 4.6 | CATGGCATACTTGCTGCTA | DVUA203 |
| Desulfovibrio vulgaris str. Miyazaki F | ||||
|
Position: -38
Score: 4.23798 Sequence: CGTGGCGCGCGCCCTGCCT
Locus tag: DvMF_2435
Name: null Funciton: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
Locus tag: DvMF_2436
Name: null Funciton: Type III secretion spans bacterial envelope protein (YscO)
Locus tag: DvMF_2437
Name: null Funciton: HpaP protein; Type III secretion protein (YscP)
Locus tag: DvMF_2438
Name: null Funciton: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)
Locus tag: DvMF_2439
Name: null Funciton: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
Locus tag: DvMF_2440
Name: null Funciton: anti-anti-sigma factor
Locus tag: DvMF_2441
Name: rsbW Funciton: putative anti-sigma regulatory factor, serine/threonine protein kinase |
||||
| DvMF_2435-DvMF_2436-DvMF_2437-DvMF_2438-DvMF_2439-DvMF_2440-rsbW | -38 | 4.2 | CGTGGCGCGCGCCCTGCCT | DvMF_2435 |