Orthologous regulated operons containing yscR gene

Properties
Regulog:	RpoN - Desulfovibrionales
Regulator type:	Transcription factor
Regulator family:	Sigma54
Regulation mode:
Biological process:	Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum:	Proteobacteria

Built upon 487 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Desulfovibrio vulgaris Hildenborough
Position: -62 Score: 4.64067 Sequence: CATGGCATACTTGCTGCTA Locus tag: DVUA203 Name: DVUA203 Funciton: hypothetical protein Locus tag: DVUA0109 Name: null Funciton: Type III secretion chaperone protein for YopD (SycD) Locus tag: DVUA0110 Name: null Funciton: Type III secretion host injection protein (YopB) Locus tag: DVUA0111 Name: null Funciton: Type III secretion host injection and negative regulator protein (YopD) Locus tag: DVUA201 Name: DVUA201 (DVUA0111.1) Funciton: Tir chaperone family protein Locus tag: DVUA0112 Name: null Funciton: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) Locus tag: DVUA0113 Name: null Funciton: Type III secretion inner membrane protein (YscD,homologous to flagellar export components) Locus tag: DVUA0114 Name: null Funciton: hypothetical protein Locus tag: DVUA0115 Name: null Funciton: Type III secretion system protein, YscF family Locus tag: DVUA0116 Name: null Funciton: hypothetical protein Locus tag: DORF2111 Name: DORF2111 Funciton: null Locus tag: DVUA0117 Name: escJ Funciton: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) Locus tag: DVUA200 Name: DVUA200 Funciton: null Locus tag: DVUA0118 Name: sctL Funciton: type III secretion protein, YopL family putative type III secretion protein Locus tag: DVUA0119 Name: sctN Funciton: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) Locus tag: DVUA0119.1 Name: DVUA0119.1 Funciton: null Locus tag: DVUA0120 Name: null Funciton: HpaP protein; Type III secretion protein (YscP) Locus tag: DVUA0121 Name: null Funciton: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) Locus tag: DVUA0122 Name: yscR Funciton: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) Locus tag: DVUA0123 Name: null Funciton: anti-anti-sigma factor Locus tag: DVUA0124 Name: rsbW Funciton: putative anti-sigma regulatory factor, serine/threonine protein kinase Locus tag: DVUA0125 Name: slt Funciton: transglycosylase, SLT family
DVUA203-DVUA0109-DVUA0110-DVUA0111-DVUA201 (DVUA0111.1)-DVUA0112-DVUA0113-DVUA0114-DVUA0115-DVUA0116-DORF2111-escJ-DVUA200-sctL-sctN-DVUA0119.1-DVUA0120-DVUA0121-yscR-DVUA0123-rsbW-slt	-62	4.6	CATGGCATACTTGCTGCTA	DVUA203
Desulfovibrio vulgaris str. Miyazaki F
Position: -38 Score: 4.23798 Sequence: CGTGGCGCGCGCCCTGCCT Locus tag: DvMF_2435 Name: null Funciton: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) Locus tag: DvMF_2436 Name: null Funciton: Type III secretion spans bacterial envelope protein (YscO) Locus tag: DvMF_2437 Name: null Funciton: HpaP protein; Type III secretion protein (YscP) Locus tag: DvMF_2438 Name: null Funciton: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) Locus tag: DvMF_2439 Name: null Funciton: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) Locus tag: DvMF_2440 Name: null Funciton: anti-anti-sigma factor Locus tag: DvMF_2441 Name: rsbW Funciton: putative anti-sigma regulatory factor, serine/threonine protein kinase
DvMF_2435-DvMF_2436-DvMF_2437-DvMF_2438-DvMF_2439-DvMF_2440-rsbW	-38	4.2	CGTGGCGCGCGCCCTGCCT	DvMF_2435