Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing truA gene

Properties
Regulog: RpoN - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Phylum: Proteobacteria
Built upon 487 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Desulfomicrobium baculatum DSM 4028
Position: -29
Score: 4.51227
Sequence: TTGTGCACGCTTTTTGCTA
Locus tag: Dbac_2249
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: Dbac_2250
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: Dbac_2251
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Dbac_2252
Name: null
Funciton: Flagellin, putative
fliJ-flbB-truA-Dbac_2252 -29 4.5 TTGTGCACGCTTTTTGCTA Dbac_2249
Desulfovibrio desulfuricans G20
Position: -112
Score: 5.10076
Sequence: TCTGGCCTGATCTTTGCTT
Locus tag: Dde_2705
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: Dde_2706
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: Dde_2707
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
fliJ-flbB-truA -112 5.1 TCTGGCCTGATCTTTGCTT Dde_2705
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Position: -119
Score: 3.9483
Sequence: CGTGGCATGGTGGCTGCGC
Position: -63
Score: 4.9531
Sequence: CTTGGCCCGCTGTTTGCAC
Locus tag: Ddes_0698
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: Ddes_0697
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: Ddes_0696
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
fliJ-flbB-truA -119 3.9 CGTGGCATGGTGGCTGCGC Ddes_0698
-63 5 CTTGGCCCGCTGTTTGCAC
Desulfovibrio magneticus RS-1
Position: -58
Score: 4.74367
Sequence: ACTGGCCCGTGTCTTGCAA
Locus tag: DMR_42100
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: DMR_42090
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: DMR_42080
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
fliJ-flbB-truA -58 4.7 ACTGGCCCGTGTCTTGCAA DMR_42100
Desulfovibrio vulgaris Hildenborough
Position: -72
Score: 4.61576
Sequence: AACGGCCCGTTCCTTGCTA
Locus tag: DVU0913
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: DVU0912
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: DVU0911
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
fliJ-flbB-truA -72 4.6 AACGGCCCGTTCCTTGCTA DVU0913
Desulfovibrio vulgaris str. Miyazaki F
Position: -93
Score: 4.80653
Sequence: TTCGGCCCGGTATTTGCTA
Locus tag: DvMF_1393
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: DvMF_1394
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: DvMF_1395
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
fliJ-flbB-truA -93 4.8 TTCGGCCCGGTATTTGCTA DvMF_1393
Lawsonia intracellularis PHE/MN1-00
Position: -73
Score: 4.28147
Sequence: TTAGGAATATTTTTTGCAT
Locus tag: LI1060
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: LI1061
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: LI1062
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
fliJ-flbB-truA -73 4.3 TTAGGAATATTTTTTGCAT LI1060
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