Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ygbM gene

Properties
Regulog: SMb20667 - Rhizobiales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Built upon 29 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azorhizobium caulinodans ORS 571
Position: -125
Score: 6.61902
Sequence: AAATGGCAGCGCTGCCAAAA
Position: -69
Score: 6.61902
Sequence: AAATGGCAGCGCTGCCAAAA
Locus tag: AZC_2777
Name: ygbJ
Funciton: 3-hydroxyacid dehydrogenase/reductase
Locus tag: AZC_2776
Name: ygbM
Funciton: Hydroxypyruvate isomerase (EC 5.3.1.22)
Locus tag: AZC_2775
Name: ygbK
Funciton: Uncharacterized protein conserved in bacteria
ygbJ-ygbM-ygbK -125 6.6 AAATGGCAGCGCTGCCAAAA AZC_2777
-69 6.6 AAATGGCAGCGCTGCCAAAA
Rhizobium etli CFN 42
Position: -99
Score: 6.61902
Sequence: TTTTGGCAGCGCTGCCATTT
Position: -45
Score: 6.59375
Sequence: GAATGGCAGCGCTGCCAAAA
Locus tag: RHE_PF00345
Name: ygbJ
Funciton: 3-hydroxyacid dehydrogenase/reductase
Locus tag: RHE_PF00346
Name: ygbM
Funciton: Hydroxypyruvate isomerase (EC 5.3.1.22)
Locus tag: RHE_PF00347
Name: ygbK
Funciton: Uncharacterized protein conserved in bacteria
ygbJ-ygbM-ygbK -99 6.6 TTTTGGCAGCGCTGCCATTT RHE_PF00345
-45 6.6 GAATGGCAGCGCTGCCAAAA
Rhizobium leguminosarum bv. viciae 3841
Position: -56
Score: 6.50884
Sequence: TTTTGGCAGCGCTACCAATT
Position: -33
Score: 6.54869
Sequence: CGTTGGCAGCGCTGCCAAAA
Locus tag: pRL120617
Name: COG2271
Funciton: Putative sugar acid transporter, MFS family
Locus tag: pRL120616
Name: ygbJ
Funciton: 3-hydroxyacid dehydrogenase/reductase
Locus tag: pRL120615
Name: ygbM
Funciton: Hydroxypyruvate isomerase (EC 5.3.1.22)
Locus tag: pRL120614
Name: ygbK
Funciton: Uncharacterized protein conserved in bacteria
COG2271-ygbJ-ygbM-ygbK -56 6.5 TTTTGGCAGCGCTACCAATT pRL120617
-33 6.5 CGTTGGCAGCGCTGCCAAAA
Rhizobium sp. NGR234
Position: -136
Score: 6.50884
Sequence: TTTTGGCAGCGCTACCAATT
Position: -113
Score: 6.37894
Sequence: ACTTGGCAGCGCTGCCAAAC
Position: -81
Score: 6.35756
Sequence: TAATGGCAGCGCTGCCATCT
Locus tag: NGR_b20320
Name: COG2271
Funciton: Putative sugar acid transporter, MFS family
Locus tag: NGR_b20330
Name: ygbJ
Funciton: 3-hydroxyacid dehydrogenase/reductase
Locus tag: NGR_b20340
Name: ygbM
Funciton: Hydroxypyruvate isomerase (EC 5.3.1.22)
Locus tag: NGR_b20350
Name: ygbK
Funciton: Uncharacterized protein conserved in bacteria
COG2271-ygbJ-ygbM-ygbK -136 6.5 TTTTGGCAGCGCTACCAATT NGR_b20320
-113 6.4 ACTTGGCAGCGCTGCCAAAC
-81 6.4 TAATGGCAGCGCTGCCATCT
Sinorhizobium meliloti 1021
Position: -81
Score: 6.50884
Sequence: TTTTGGCAGCGCTACCAATT
Position: -59
Score: 6.4508
Sequence: GGTTGGCAGCGCTGCCAAAG
Locus tag: SMb20668
Name: ygbJ
Funciton: 3-hydroxyacid dehydrogenase/reductase
Locus tag: SMb20669
Name: ygbM
Funciton: Hydroxypyruvate isomerase (EC 5.3.1.22)
Locus tag: SMb20670
Name: ygbK
Funciton: Uncharacterized protein conserved in bacteria
ygbJ-ygbM-ygbK -81 6.5 TTTTGGCAGCGCTACCAATT SMb20668
-59 6.5 GGTTGGCAGCGCTGCCAAAG
Xanthobacter autotrophicus Py2
Position: -131
Score: 6.38939
Sequence: TTTTGGCAGCGCTACCATTT
Position: -108
Score: 6.18486
Sequence: GTTTGGCAGCGCTGCCACTG
Position: -76
Score: 6.07063
Sequence: TGATGGCAGCGCTGCCATGC
Locus tag: Xaut_1028
Name: COG2271
Funciton: Putative sugar acid transporter, MFS family
Locus tag: Xaut_1027
Name: ygbJ
Funciton: 3-hydroxyacid dehydrogenase/reductase
Locus tag: Xaut_1026
Name: ygbM
Funciton: Hydroxypyruvate isomerase (EC 5.3.1.22)
Locus tag: Xaut_1025
Name: ygbK
Funciton: Uncharacterized protein conserved in bacteria
COG2271-ygbJ-ygbM-ygbK -131 6.4 TTTTGGCAGCGCTACCATTT Xaut_1028
-108 6.2 GTTTGGCAGCGCTGCCACTG
-76 6.1 TGATGGCAGCGCTGCCATGC
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