Orthologous regulated operons containing ytcQ gene

Properties
Regulog:	RmgR - Bacillales
Regulator type:	Transcription factor
Regulator family:	AraC
Regulation mode:	activator
Biological process:	Rhamnogalacturonides utilization
Effector:
Phylum:	Firmicutes

Built upon 10 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Bacillus clausii KSM-K16
Position: -174 Score: 5.27723 Sequence: TCATTT-(13)-gCAaaT Locus tag: ABC1144 Name: ytcQ Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component Locus tag: ABC1145 Name: yteP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 Locus tag: ABC1146 Name: ytcP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 Locus tag: ABC1147 Name: null Funciton: Putative hydrolase Locus tag: ABC1148 Name: xylB Funciton: Beta-xylosidase (EC 3.2.1.37) Locus tag: ABC1149 Name: rhiN2 Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) Locus tag: ABC1150 Name: yteS Funciton: putative lipoprotein required for rhamnogalaturonan degradation Locus tag: ABC1151 Name: null Funciton: Hypothetical protein Locus tag: ABC1152 Name: yteT Funciton: Putative dehydrogenase of rhamnogalaturonan degradation Locus tag: ABC1153 Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7) Locus tag: ABC1154 Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58)
ytcQ-yteP-ytcP-ABC1147-xylB-rhiN2-yteS-ABC1151-yteT-uxaA-uxaB	-174	5.3	TCATTT-(13)-gCAaaT	ABC1144
Bacillus licheniformis DSM 13
Position: -208 Score: 6.71262 Sequence: TCATCT-(13)-TCTTTT Locus tag: BLi03169 Name: ytcP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 Locus tag: BLi03168 Name: ytcQ Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
ytcP-ytcQ	-208	6.7	TCATCT-(13)-TCTTTT	BLi03169
Bacillus subtilis subsp. subtilis str. 168
Position: -206 Score: 7.68228 Sequence: TCATTT-(13)-TCTTTT Locus tag: BSU30170 Name: ytcP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 Locus tag: BSU30160 Name: ytcQ Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
ytcP-ytcQ	-206	7.7	TCATTT-(13)-TCTTTT	BSU30170
Paenibacillus sp. JDR-2
Position: -141 Score: 6.71262 Sequence: TCAATT-(13)-TCATTA Locus tag: Pjdr2_1802 Name: ytcQ Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component Locus tag: Pjdr2_1803 Name: yteP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 Locus tag: Pjdr2_1804 Name: ytcP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
ytcQ-yteP-ytcP	-141	6.7	TCAATT-(13)-TCATTA	Pjdr2_1802