Orthologous regulated operons containing ramA gene

Properties
Regulog:	HTCS_Rgu-2 - Bacteroidaceae
Regulator type:	Transcription factor
Regulator family:	[Other]
Regulation mode:	activator
Biological process:	Rhamnogalacturonides utilization
Effector:
Phylum:	Bacteroidetes

Built upon 39 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Bacteroides dorei DSM 17855
Position: -94 Score: 9.29039 Sequence: TATACGAATTTCCA-(6)-TGTACTTCTTTCTA Locus tag: BACDOR_00368 Name: bguA Funciton: Beta-glucuronidase (EC 3.2.1.31) Locus tag: BACDOR_00367 Name: rghT Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) Locus tag: BACDOR_00366 Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15) Locus tag: BACDOR_00365 Name: BT4147 Funciton: Conserved hypothetical protein Locus tag: BACDOR_00364 Name: BVU_0185 Funciton: Conserved hypothetical protein Locus tag: BACDOR_00363 Name: pehX2 Funciton: Predicted endopolygalacturonase Locus tag: BACDOR_00362 Name: ramA Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-BT4147-BVU_0185-pehX2-ramA	-94	9.3	TATACGAATTTCCA-(6)-TGTACTTCTTTCTA	BACDOR_00368
Bacteroides ovatus ATCC 8483
Position: -141 Score: 8.19596 Sequence: TGGACAATATTTCA-(6)-TGTAGTTTTGTACA Position: -83 Score: 8.54903 Sequence: GATACAATATTCTA-(6)-TGTACATCTTTCTA Locus tag: BACOVA_04950 Name: bguA Funciton: Beta-glucuronidase (EC 3.2.1.31) Locus tag: BACOVA_04949 Name: rghT Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) Locus tag: BACOVA_04948 Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15) Locus tag: BACOVA_04947 Name: BT4147 Funciton: Conserved hypothetical protein Locus tag: BACOVA_04946 Name: pehX2 Funciton: Predicted endopolygalacturonase Locus tag: BACOVA_04945 Name: ramA Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-BT4147-pehX2-ramA	-141	8.2	TGGACAATATTTCA-(6)-TGTAGTTTTGTACA	BACOVA_04950
	-83	8.5	GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides plebeius DSM 17135
Position: -136 Score: 8.04414 Sequence: CGTACAAAAATCCA-(6)-TGTACATTCCTATA Locus tag: BACPLE_03595 Name: ramA Funciton: Predicted alpha-L-rhamnosidase
ramA	-136	8	CGTACAAAAATCCA-(6)-TGTACATTCCTATA	BACPLE_03595
Bacteroides thetaiotaomicron VPI-5482
Position: -111 Score: 8.54903 Sequence: GATACAATATTCTA-(6)-TGTACATCTTTCTA Locus tag: BT4151 Name: bguA Funciton: Beta-glucuronidase (EC 3.2.1.31) Locus tag: BT4150 Name: rghT Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) Locus tag: BT4149 Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15) Locus tag: BT4148 Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15) Locus tag: BT4147 Name: BT4147 Funciton: Conserved hypothetical protein Locus tag: BT4146 Name: pehX2 Funciton: Predicted endopolygalacturonase Locus tag: BT4145 Name: ramA Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-pehX3-BT4147-pehX2-ramA	-111	8.5	GATACAATATTCTA-(6)-TGTACATCTTTCTA	BT4151
Bacteroides vulgatus ATCC 8482
Position: -94 Score: 9.29039 Sequence: TATACGAATTTCCA-(6)-TGTACTTCTTTCTA Locus tag: BVU_0181 Name: bguA Funciton: Beta-glucuronidase (EC 3.2.1.31) Locus tag: BVU_0182 Name: rghT Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86) Locus tag: BVU_0183 Name: pehX3 Funciton: Polygalacturonase (EC 3.2.1.15) Locus tag: BVU_0184 Name: BT4147 Funciton: Conserved hypothetical protein Locus tag: BVU_0185 Name: BVU_0185 Funciton: Conserved hypothetical protein Locus tag: BVU_0186 Name: pehX2 Funciton: Predicted endopolygalacturonase Locus tag: BVU_0187 Name: ramA Funciton: Predicted alpha-L-rhamnosidase
bguA-rghT-pehX3-BT4147-BVU_0185-pehX2-ramA	-94	9.3	TATACGAATTTCCA-(6)-TGTACTTCTTTCTA	BVU_0181