Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rgaE gene

Properties
Regulog: HTCS_Rgu-1 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Built upon 26 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bacteroides cellulosilyticus DSM 14838
Position: -106
Score: 9.26705
Sequence: TAAATAATGCAC-(9)-CGAAAAGTACAC
Locus tag: BACCELL_03119
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACCELL_03120
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
rhiN-rgaE -106 9.3 TAAATAATGCAC-(9)-CGAAAAGTACAC BACCELL_03119
Bacteroides dorei DSM 17855
Position: -105
Score: 9.4358
Sequence: CAAATAATACAC-(9)-TGAAAAGTGCAC
Locus tag: BACDOR_03278
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACDOR_03277
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
rhiN-rgaE -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC BACDOR_03278
Bacteroides eggerthii DSM 20697
Position: -107
Score: 9.72057
Sequence: CAAAAAATGCAC-(9)-CAAAAAATGCAC
Locus tag: BACEGG_00863
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACEGG_00864
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
rhiN-rgaE -107 9.7 CAAAAAATGCAC-(9)-CAAAAAATGCAC BACEGG_00863
Bacteroides ovatus ATCC 8483
Position: -155
Score: 8.92159
Sequence: CAAAAAATGCAC-(9)-TAAAAAATCCCA
Locus tag: BACOVA_04900
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACOVA_04901
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
rhiN-rgaE -155 8.9 CAAAAAATGCAC-(9)-TAAAAAATCCCA BACOVA_04900
Bacteroides stercoris ATCC 43183
Position: -107
Score: 9.81701
Sequence: CAAAAAATGCAC-(9)-CAAAAAGTGCAC
Locus tag: BACSTE_03304
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BACSTE_03303
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
rhiN-rgaE -107 9.8 CAAAAAATGCAC-(9)-CAAAAAGTGCAC BACSTE_03304
Bacteroides thetaiotaomicron VPI-5482
Position: -105
Score: 9.08411
Sequence: CAAAAAATACAC-(9)-TAAAAAATCCCA
Locus tag: BT4108
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BT4109
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Locus tag: BT4110
Name: pemB
Funciton: Pectinesterase (EC 3.1.1.11)
rhiN-rgaE-pemB -105 9.1 CAAAAAATACAC-(9)-TAAAAAATCCCA BT4108
Bacteroides vulgatus ATCC 8482
Position: -105
Score: 9.4358
Sequence: CAAATAATACAC-(9)-TGAAAAGTGCAC
Locus tag: BVU_1797
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BVU_1798
Name: rgaE
Funciton: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
rhiN-rgaE -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC BVU_1797
© 2009-2020 RegPrecise