Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rhaR gene

Properties
Regulog: RhaR - Chloroflexia
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Chloroflexi
Built upon 12 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Chloroflexus aggregans DSM 9485
Position: -140
Score: 7.21639
Sequence: TCGTAA-(4)-TCGAAA
Position: -130
Score: 6.93323
Sequence: TCGAAA-(4)-TTGACA
Position: -120
Score: 6.65008
Sequence: TTGACA-(4)-TTGAAA
Locus tag: Cagg_3309
Name: rhaR
Funciton: Transcriptional regulator of rhamnose utilization, DeoR family
Locus tag: Cagg_3310
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: Cagg_3311
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: Cagg_3312
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: Cagg_3313
Name: rhaF
Funciton: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
Locus tag: Cagg_3314
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: Cagg_3315
Name: rhaA
Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: Cagg_3316
Name: rhaEW
Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Cagg_3317
Name: rhaB
Funciton: Rhamnulokinase (EC 2.7.1.5)
rhaR-rhaG-rhaH-rhaJ-rhaF-rhaM-rhaA-rhaEW-rhaB -140 7.2 TCGTAA-(4)-TCGAAA Cagg_3309
-130 6.9 TCGAAA-(4)-TTGACA
-120 6.7 TTGACA-(4)-TTGAAA
Chloroflexus sp. Y-400-fl
Position: -91
Score: 6.79033
Sequence: TCGTAA-(4)-TCGTAA
Position: -81
Score: 6.50717
Sequence: TCGTAA-(4)-TTGACA
Position: -71
Score: 6.65008
Sequence: TTGACA-(4)-TTGAAA
Locus tag: Chy400_2467
Name: rhaR
Funciton: Transcriptional regulator of rhamnose utilization, DeoR family
Locus tag: Chy400_2466
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: Chy400_2465
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: Chy400_2464
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: Chy400_2463
Name: rhaF
Funciton: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
Locus tag: Chy400_2462
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: Chy400_2461
Name: rhaA
Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: Chy400_2460
Name: rhaEW
Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Chy400_2459
Name: rhaB
Funciton: Rhamnulokinase (EC 2.7.1.5)
rhaR-rhaG-rhaH-rhaJ-rhaF-rhaM-rhaA-rhaEW-rhaB -91 6.8 TCGTAA-(4)-TCGTAA Chy400_2467
-81 6.5 TCGTAA-(4)-TTGACA
-71 6.7 TTGACA-(4)-TTGAAA
Roseiflexus castenholzii DSM 13941
Position: -78
Score: 7.02131
Sequence: TCGAAA-(4)-CCGAAA
Position: -68
Score: 6.31209
Sequence: CCGAAA-(4)-TTGACA
Position: -58
Score: 6.93323
Sequence: TTGACA-(4)-TCGAAA
Locus tag: Rcas_3457
Name: rhaR
Funciton: Transcriptional regulator of rhamnose utilization, DeoR family
Locus tag: Rcas_3456
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: Rcas_3455
Name: rhaA
Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: Rcas_3454
Name: rhaEW
Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Rcas_3453
Name: rhaB
Funciton: Rhamnulokinase (EC 2.7.1.5)
rhaR-rhaM-rhaA-rhaEW-rhaB -78 7 TCGAAA-(4)-CCGAAA Rcas_3457
-68 6.3 CCGAAA-(4)-TTGACA
-58 6.9 TTGACA-(4)-TCGAAA
Roseiflexus sp. RS-1
Position: -94
Score: 7.64245
Sequence: TCGAAA-(4)-TCGAAA
Position: -84
Score: 6.93323
Sequence: TCGAAA-(4)-TTGACA
Position: -74
Score: 6.93323
Sequence: TTGACA-(4)-TCGAAA
Locus tag: RoseRS_2724
Name: rhaR
Funciton: Transcriptional regulator of rhamnose utilization, DeoR family
Locus tag: RoseRS_2725
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: RoseRS_2726
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: RoseRS_2727
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: RoseRS_2729
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: RoseRS_2730
Name: rhaA
Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: RoseRS_2731
Name: rhaEW
Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: RoseRS_2732
Name: rhaB
Funciton: Rhamnulokinase (EC 2.7.1.5)
rhaR-rhaG-rhaH-rhaJ-rhaM-rhaA-rhaEW-rhaB -94 7.6 TCGAAA-(4)-TCGAAA RoseRS_2724
-84 6.9 TCGAAA-(4)-TTGACA
-74 6.9 TTGACA-(4)-TCGAAA
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