Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing xylB gene

Properties
Regulog: CcpA - Clostridia-1
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbohydrate metabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Built upon 436 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -104
Score: 4.87179
Sequence: ATGAAAAAGTTTACAA
Position: -35
Score: 4.2349
Sequence: TTTAAAAAGTTATTTA
Locus tag: CAC2612
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: CAC2611
Name: null
Funciton: Hypothetical protein
Locus tag: CAC2610
Name: null
Funciton: Predicted xylose isomerase
xylB-CAC2611-CAC2610 -104 4.9 ATGAAAAAGTTTACAA CAC2612
-35 4.2 TTTAAAAAGTTATTTA
Clostridium beijerincki NCIMB 8052
Position: -152
Score: 4.44107
Sequence: ATGAAAATGTATTCAA
Position: -83
Score: 4.2349
Sequence: TTTAAAAAGTTATTTA
Locus tag: Cbei_2384
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: Cbei_2385
Name: xylR
Funciton: Transcription repressor of xylose utilization, ROK family
xylB-xylR -152 4.4 ATGAAAATGTATTCAA Cbei_2384
-83 4.2 TTTAAAAAGTTATTTA
Clostridium butyricum 5521
Position: -77
Score: 3.93322
Sequence: TTTAAAAAGAATTTTA
Position: -57
Score: 4.47884
Sequence: TTAAAAATGTTTTTAT
Position: -34
Score: 4.5513
Sequence: TTGTAAATGTTTAATA
Locus tag: CBY_2342
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: CBY_2343
Name: xylR
Funciton: Transcription repressor of xylose utilization, ROK family
Locus tag: CBY_2344
Name: tal
Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: CBY_2345
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
xylB-xylR-tal-tkt -77 3.9 TTTAAAAAGAATTTTA CBY_2342
-57 4.5 TTAAAAATGTTTTTAT
-34 4.6 TTGTAAATGTTTAATA
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