Orthologous regulated operons containing hyaF gene
| Regulog: | Fnr - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella amazonensis SB2B | ||||
|
Position: -107
Score: 4.22343 Sequence: TTGACGTGTATCAA
Locus tag: Sama_1679
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sama_1678
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sama_1677
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sama_1676
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sama_1675
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sama_1674
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -107 | 4.2 | TTGACGTGTATCAA | Sama_1679 |
| Shewanella baltica OS155 | ||||
|
Position: -163
Score: 3.78427 Sequence: TAGATCTACGTCAT
Position: -103
Score: 4.85516 Sequence: TTGATATACATCAA
Locus tag: Sbal_1889
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sbal_1888
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sbal_1887
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sbal_1886
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sbal_1885
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sbal_1884
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -163 | 3.8 | TAGATCTACGTCAT | Sbal_1889 |
| -103 | 4.9 | TTGATATACATCAA | ||
| Shewanella frigidimarina NCIMB 400 | ||||
|
Position: -164
Score: 4.44868 Sequence: TTGATCAACATCAT
Position: -103
Score: 4.72985 Sequence: TTGATTTATATCAA
Locus tag: Sfri_2103
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sfri_2104
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sfri_2105
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sfri_2106
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sfri_2107
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sfri_2108
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -164 | 4.4 | TTGATCAACATCAT | Sfri_2103 |
| -103 | 4.7 | TTGATTTATATCAA | ||
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -208
Score: 3.80531 Sequence: GTGATCTCCATCAC
Position: -148
Score: 5.16517 Sequence: ATGATCTAGCTCAA
Position: -87
Score: 3.93909 Sequence: TTGACGCATATCAA
Locus tag: Shal_2261
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shal_2262
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shal_2263
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shal_2264
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shal_2265
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shal_2266
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -208 | 3.8 | GTGATCTCCATCAC | Shal_2261 |
| -148 | 5.2 | ATGATCTAGCTCAA | ||
| -87 | 3.9 | TTGACGCATATCAA | ||
| Shewanella loihica PV-4 | ||||
|
Position: -220
Score: 4.65829 Sequence: TTGAAGCGGATCAA
Position: -160
Score: 4.79381 Sequence: TTGATCCAGCTCAT
Position: -99
Score: 4.23924 Sequence: TTGACATACATCAA
Locus tag: Shew_1765
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shew_1764
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shew_1763
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shew_1762
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shew_1761
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shew_1760
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -220 | 4.7 | TTGAAGCGGATCAA | Shew_1765 |
| -160 | 4.8 | TTGATCCAGCTCAT | ||
| -99 | 4.2 | TTGACATACATCAA | ||
| Shewanella oneidensis MR-1 | ||||
|
Position: -101
Score: 4.81332 Sequence: TTGATATGCATCAA
Locus tag: SO2099
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: SO2098
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: SO2097
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: SO2096
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: SO2095
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: SO2094
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -101 | 4.8 | TTGATATGCATCAA | SO2099 |
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -147
Score: 5.16517 Sequence: ATGATCTAGCTCAA
Position: -86
Score: 3.78775 Sequence: TTGACTCATATCAA
Locus tag: Spea_2033
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Spea_2032
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Spea_2031
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Spea_2030
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Spea_2029
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Spea_2028
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -147 | 5.2 | ATGATCTAGCTCAA | Spea_2033 |
| -86 | 3.8 | TTGACTCATATCAA | ||
| Shewanella putrefaciens CN-32 | ||||
|
Position: -103
Score: 4.85516 Sequence: TTGATATACATCAA
Locus tag: Sputcn32_2088
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sputcn32_2089
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sputcn32_2090
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sputcn32_2091
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sputcn32_2092
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sputcn32_2093
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -103 | 4.9 | TTGATATACATCAA | Sputcn32_2088 |
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -158
Score: 4.63853 Sequence: ATGATCTAGTTCAT
Position: -98
Score: 4.4533 Sequence: TTGATGTGAGTCAA
Locus tag: Ssed_1908
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Ssed_1907
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Ssed_1906
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Ssed_1905
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Ssed_1904
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Ssed_1903
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -158 | 4.6 | ATGATCTAGTTCAT | Ssed_1908 |
| -98 | 4.5 | TTGATGTGAGTCAA | ||
| Shewanella sp ANA-3 | ||||
|
Position: -162
Score: 4.32352 Sequence: TAGATCTGCATCAT
Position: -102
Score: 4.81332 Sequence: TTGATATGCATCAA
Locus tag: Shewana3_1880
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shewana3_1879
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shewana3_1878
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shewana3_1877
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shewana3_1876
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shewana3_1875
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -162 | 4.3 | TAGATCTGCATCAT | Shewana3_1880 |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp MR-4 | ||||
|
Position: -162
Score: 4.32352 Sequence: TAGATCTGCATCAT
Position: -102
Score: 4.81332 Sequence: TTGATATGCATCAA
Locus tag: Shewmr4_1822
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr4_1821
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shewmr4_1820
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shewmr4_1819
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shewmr4_1818
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shewmr4_1817
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -162 | 4.3 | TAGATCTGCATCAT | Shewmr4_1822 |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp MR-7 | ||||
|
Position: -162
Score: 4.32352 Sequence: TAGATCTGCATCAT
Position: -102
Score: 4.81332 Sequence: TTGATATGCATCAA
Locus tag: Shewmr7_2155
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr7_2156
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shewmr7_2157
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shewmr7_2158
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shewmr7_2159
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shewmr7_2160
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -162 | 4.3 | TAGATCTGCATCAT | Shewmr7_2155 |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp W3-18-1 | ||||
|
Position: -103
Score: 4.85516 Sequence: TTGATATACATCAA
Locus tag: Sputw3181_1924
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sputw3181_1923
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sputw3181_1922
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sputw3181_1921
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sputw3181_1920
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sputw3181_1919
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
||||
| hyaA-hyaB-hyaC-hyaD-hyaE-hyaF | -103 | 4.9 | TTGATATACATCAA | Sputw3181_1924 |