Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nrdD gene

Properties
Regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Built upon 541 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -114
Score: 4.60399
Sequence: ATGATCCATATCAA
Locus tag: Sama_1275
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sama_1276
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -114 4.6 ATGATCCATATCAA Sama_1275
Shewanella baltica OS155
Position: -122
Score: 5.21794
Sequence: ATGATCTGGATCAT
Locus tag: Sbal_1665
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sbal_1666
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -122 5.2 ATGATCTGGATCAT Sbal_1665
Shewanella denitrificans OS217
Position: -166
Score: 5.46779
Sequence: ATGATCTAGATCAA
Locus tag: Sden_1419
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sden_1420
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -166 5.5 ATGATCTAGATCAA Sden_1419
Shewanella frigidimarina NCIMB 400
Position: -106
Score: 5.42594
Sequence: ATGATCTGGATCAA
Locus tag: Sfri_2443
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sfri_2442
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -106 5.4 ATGATCTGGATCAA Sfri_2443
Shewanella halifaxensis HAW-EB4
Position: -123
Score: 5.42594
Sequence: ATGATCTGGATCAA
Locus tag: Shal_2692
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shal_2691
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -123 5.4 ATGATCTGGATCAA Shal_2692
Shewanella loihica PV-4
Position: -122
Score: 5.42594
Sequence: ATGATCTGGATCAA
Locus tag: Shew_2449
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shew_2448
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -122 5.4 ATGATCTGGATCAA Shew_2449
Shewanella oneidensis MR-1
Position: -269
Score: 3.96918
Sequence: TTGATTTTAAGCAT
Position: -121
Score: 5.21794
Sequence: ATGATCTGGATCAT
Locus tag: SO2834
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: SO2833
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -269 4 TTGATTTTAAGCAT SO2834
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345
Position: -123
Score: 5.42594
Sequence: ATGATCTGGATCAA
Locus tag: Spea_2619
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Spea_2618
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -123 5.4 ATGATCTGGATCAA Spea_2619
Shewanella piezotolerans WP3
Position: -122
Score: 5.42594
Sequence: ATGATCTGGATCAA
Position: -62
Score: 3.79317
Sequence: TTGATTTAAAGTAA
Locus tag: swp_3165
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: swp_3164
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -122 5.4 ATGATCTGGATCAA swp_3165
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32
Position: -203
Score: 3.90763
Sequence: ATGACTTAGGTCAA
Position: -121
Score: 5.21794
Sequence: ATGATCTGGATCAT
Locus tag: Sputcn32_1540
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sputcn32_1541
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -203 3.9 ATGACTTAGGTCAA Sputcn32_1540
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3
Position: -122
Score: 4.97067
Sequence: ATGATCGAGATCAA
Locus tag: Ssed_1600
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Ssed_1601
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -122 5 ATGATCGAGATCAA Ssed_1600
Shewanella sp ANA-3
Position: -121
Score: 5.21794
Sequence: ATGATCTGGATCAT
Locus tag: Shewana3_2603
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewana3_2602
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -121 5.2 ATGATCTGGATCAT Shewana3_2603
Shewanella sp MR-4
Position: -121
Score: 5.21794
Sequence: ATGATCTGGATCAT
Locus tag: Shewmr4_2441
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewmr4_2440
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -121 5.2 ATGATCTGGATCAT Shewmr4_2441
Shewanella sp MR-7
Position: -121
Score: 5.21794
Sequence: ATGATCTGGATCAT
Locus tag: Shewmr7_2511
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewmr7_2510
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -121 5.2 ATGATCTGGATCAT Shewmr7_2511
Shewanella sp W3-18-1
Position: -203
Score: 3.90763
Sequence: ATGACTTAGGTCAA
Position: -121
Score: 5.21794
Sequence: ATGATCTGGATCAT
Locus tag: Sputw3181_2559
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sputw3181_2558
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -203 3.9 ATGACTTAGGTCAA Sputw3181_2559
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908
Position: -122
Score: 4.80469
Sequence: ATGATCAGGATCAA
Locus tag: Swoo_3049
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Swoo_3048
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -122 4.8 ATGATCAGGATCAA Swoo_3049
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