Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rbsK gene

Properties
Regulog: RbsR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Firmicutes
Built upon 18 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus brevis ATCC 367
Position: -50
Score: 6.46515
Sequence: TACGTAAAACGTTTTACAAA
Locus tag: LVIS_1421
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsK -50 6.5 TACGTAAAACGTTTTACAAA LVIS_1421
Lactobacillus fermentum IFO 3956
Position: -59
Score: 6.22954
Sequence: TACGTAAAAGGTTTTAACAA
Locus tag: LAF_1738
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAF_1737
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: LAF_1736
Name: rbsP
Funciton: Predicted ribose permease
rbsK-rbsD-rbsP -59 6.2 TACGTAAAAGGTTTTAACAA LAF_1738
Lactobacillus plantarum WCFS1
Position: -74
Score: 6.22293
Sequence: TTATTAAAACGTTTTCATAA
Position: -61
Score: 6.05536
Sequence: TTCATAAAACGTTTTAATAA
Locus tag: lp_3660
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: lp_3659
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: lp_3658
Name: rbsU
Funciton: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)
rbsK-rbsD-rbsU -74 6.2 TTATTAAAACGTTTTCATAA lp_3660
-61 6.1 TTCATAAAACGTTTTAATAA
Lactobacillus reuteri JCM 1112
Position: -35
Score: 4.66901
Sequence: TAGATAAAACTGTTTACTAA
Locus tag: LAR_1219
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: LAR_1218
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsR-rbsK -35 4.7 TAGATAAAACTGTTTACTAA LAR_1219
Lactobacillus rhamnosus GG
Position: -46
Score: 6.73597
Sequence: TAAGTAAAACGTTTTACCTA
Locus tag: LGG_00372
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: LGG_00373
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsR-rbsK -46 6.7 TAAGTAAAACGTTTTACCTA LGG_00372
Lactobacillus sakei subsp. sakei 23K
Position: -49
Score: 6.91678
Sequence: TTAGTAAAACGTTTTACTAA
Locus tag: LSA0200
Name: rbsU
Funciton: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)
Locus tag: LSA0201
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: LSA0202
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LSA0203
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsU-rbsD-rbsK-rbsR -49 6.9 TTAGTAAAACGTTTTACTAA LSA0200
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Position: -46
Score: 6.56921
Sequence: TTAGTAAAACGTTTAACCAA
Locus tag: LEUM_0794
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsK -46 6.6 TTAGTAAAACGTTTAACCAA LEUM_0794
Oenococcus oeni PSU-1
Position: 25
Score: 6.44693
Sequence: TTAGTAAAGCGTTTTACTTA
Locus tag: OEOE_1612
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: OEOE_1613
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: OEOE_1614
Name: rbsP
Funciton: Predicted ribose permease
rbsK-rbsD-rbsP 25 6.4 TTAGTAAAGCGTTTTACTTA OEOE_1612
Pediococcus pentosaceus ATCC 25745
Position: -67
Score: 5.64475
Sequence: CTATTAAAACGTTTTCATAA
Position: -54
Score: 5.33283
Sequence: TTCATAAAACGTTTTAAACA
Locus tag: PEPE_1699
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PEPE_1698
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PEPE_1697
Name: rbsU
Funciton: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)
rbsK-rbsD-rbsU -67 5.6 CTATTAAAACGTTTTCATAA PEPE_1699
-54 5.3 TTCATAAAACGTTTTAAACA
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