Orthologous regulated operons containing rbsD gene
| Regulog: | RbsR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Phylum: | Firmicutes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Lactobacillus brevis ATCC 367 | ||||
|
Position: -125
Score: 5.03979 Sequence: TAAGTAAATCGATTTACGCA
Locus tag: LVIS_1589
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1) |
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| rbsD | -125 | 5 | TAAGTAAATCGATTTACGCA | LVIS_1589 |
| Lactobacillus casei ATCC 334 | ||||
|
Position: -45
Score: 6.73597 Sequence: TAAGTAAAACGTTTTACCTA
Locus tag: LSEI_0306
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: LSEI_0307
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: LSEI_0308
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: LSEI_0309
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: LSEI_0310
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
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| rbsR-rbsD-rbsA-rbsC-rbsB | -45 | 6.7 | TAAGTAAAACGTTTTACCTA | LSEI_0306 |
| Lactobacillus fermentum IFO 3956 | ||||
|
Position: -59
Score: 6.22954 Sequence: TACGTAAAAGGTTTTAACAA
Locus tag: LAF_1738
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAF_1737
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: LAF_1736
Name: rbsP Funciton: Predicted ribose permease |
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| rbsK-rbsD-rbsP | -59 | 6.2 | TACGTAAAAGGTTTTAACAA | LAF_1738 |
| Lactobacillus plantarum WCFS1 | ||||
|
Position: -74
Score: 6.22293 Sequence: TTATTAAAACGTTTTCATAA
Position: -61
Score: 6.05536 Sequence: TTCATAAAACGTTTTAATAA
Locus tag: lp_3660
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: lp_3659
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: lp_3658
Name: rbsU Funciton: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) |
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| rbsK-rbsD-rbsU | -74 | 6.2 | TTATTAAAACGTTTTCATAA | lp_3660 |
| -61 | 6.1 | TTCATAAAACGTTTTAATAA | ||
| Lactobacillus sakei subsp. sakei 23K | ||||
|
Position: -49
Score: 6.91678 Sequence: TTAGTAAAACGTTTTACTAA
Locus tag: LSA0200
Name: rbsU Funciton: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)
Locus tag: LSA0201
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: LSA0202
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LSA0203
Name: rbsR Funciton: Transcriptional repressor of ribose utilization, LacI family |
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| rbsU-rbsD-rbsK-rbsR | -49 | 6.9 | TTAGTAAAACGTTTTACTAA | LSA0200 |
| Oenococcus oeni PSU-1 | ||||
|
Position: 25
Score: 6.44693 Sequence: TTAGTAAAGCGTTTTACTTA
Locus tag: OEOE_1612
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: OEOE_1613
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: OEOE_1614
Name: rbsP Funciton: Predicted ribose permease |
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| rbsK-rbsD-rbsP | 25 | 6.4 | TTAGTAAAGCGTTTTACTTA | OEOE_1612 |
| Pediococcus pentosaceus ATCC 25745 | ||||
|
Position: -67
Score: 5.64475 Sequence: CTATTAAAACGTTTTCATAA
Position: -54
Score: 5.33283 Sequence: TTCATAAAACGTTTTAAACA
Locus tag: PEPE_1699
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PEPE_1698
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PEPE_1697
Name: rbsU Funciton: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) |
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| rbsK-rbsD-rbsU | -67 | 5.6 | CTATTAAAACGTTTTCATAA | PEPE_1699 |
| -54 | 5.3 | TTCATAAAACGTTTTAAACA | ||