Orthologous regulated operons containing hydC gene
| Regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella amazonensis SB2B | ||||
|
Position: -172
Score: 3.44118 Sequence: AAGCATGACACACCTCATGTTA
Locus tag: Sama_1679
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sama_1678
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sama_1677
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sama_1676
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sama_1675
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sama_1674
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -172 | 3.4 | AAGCATGACACACCTCATGTTA | Sama_1679 |
| Shewanella baltica OS155 | ||||
|
Position: -229
Score: 3.92975 Sequence: TTAAGTGACCGATTTCATCCAA
Position: -167
Score: 3.73976 Sequence: AAATTAGATCTACGTCATGTTA
Position: -107
Score: 4.20997 Sequence: ATTCTTGATATACATCAAGAAT
Locus tag: Sbal_1889
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sbal_1888
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sbal_1887
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sbal_1886
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sbal_1885
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sbal_1884
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -229 | 3.9 | TTAAGTGACCGATTTCATCCAA | Sbal_1889 |
| -167 | 3.7 | AAATTAGATCTACGTCATGTTA | ||
| -107 | 4.2 | ATTCTTGATATACATCAAGAAT | ||
| Shewanella frigidimarina NCIMB 400 | ||||
|
Position: -174
Score: 3.76852 Sequence: TTTTGTTAACTTGATCAACATC
Position: -168
Score: 4.36595 Sequence: TAACTTGATCAACATCATAAAT
Locus tag: Sfri_2103
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sfri_2104
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sfri_2105
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sfri_2106
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sfri_2107
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sfri_2108
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -174 | 3.8 | TTTTGTTAACTTGATCAACATC | Sfri_2103 |
| -168 | 4.4 | TAACTTGATCAACATCATAAAT | ||
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -212
Score: 5.04352 Sequence: TTACGTGATCTCCATCACCTTT
Locus tag: Shal_2261
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shal_2262
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shal_2263
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shal_2264
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shal_2265
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shal_2266
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -212 | 5 | TTACGTGATCTCCATCACCTTT | Shal_2261 |
| Shewanella loihica PV-4 | ||||
|
Position: -164
Score: 3.80383 Sequence: AAACTTGATCCAGCTCATAGCT
Position: -103
Score: 3.70832 Sequence: AATGTTGACATACATCAACATT
Locus tag: Shew_1765
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shew_1764
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shew_1763
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shew_1762
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shew_1761
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shew_1760
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -164 | 3.8 | AAACTTGATCCAGCTCATAGCT | Shew_1765 |
| -103 | 3.7 | AATGTTGACATACATCAACATT | ||
| Shewanella oneidensis MR-1 | ||||
|
Position: -105
Score: 3.97644 Sequence: ATTCTTGATATGCATCAATAAT
Locus tag: SO2099
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: SO2098
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: SO2097
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: SO2096
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: SO2095
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: SO2094
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -105 | 4 | ATTCTTGATATGCATCAATAAT | SO2099 |
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -211
Score: 4.63119 Sequence: TTACGTGACCACGATCACCTTT
Locus tag: Spea_2033
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Spea_2032
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Spea_2031
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Spea_2030
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Spea_2029
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Spea_2028
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -211 | 4.6 | TTACGTGACCACGATCACCTTT | Spea_2033 |
| Shewanella putrefaciens CN-32 | ||||
|
Position: -167
Score: 3.70145 Sequence: AAATTAGATCTGCGTCATGTTA
Position: -107
Score: 4.01474 Sequence: ATTCTTGATATACATCAATAAT
Locus tag: Sputcn32_2088
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sputcn32_2089
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sputcn32_2090
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sputcn32_2091
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sputcn32_2092
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sputcn32_2093
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA | Sputcn32_2088 |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -162
Score: 3.97894 Sequence: AAAGATGATCTAGTTCATATTG
Locus tag: Ssed_1908
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Ssed_1907
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Ssed_1906
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Ssed_1905
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Ssed_1904
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Ssed_1903
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -162 | 4 | AAAGATGATCTAGTTCATATTG | Ssed_1908 |
| Shewanella sp ANA-3 | ||||
|
Position: -166
Score: 3.91857 Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.17166 Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewana3_1880
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewana3_1879
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewana3_1878
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewana3_1877
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewana3_1876
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewana3_1875
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -166 | 3.9 | AAATTAGATCTGCATCATGTTA | Shewana3_1880 |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-4 | ||||
|
Position: -166
Score: 3.91857 Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.17166 Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewmr4_1822
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr4_1821
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewmr4_1820
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewmr4_1819
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewmr4_1818
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewmr4_1817
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -166 | 3.9 | AAATTAGATCTGCATCATGTTA | Shewmr4_1822 |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-7 | ||||
|
Position: -166
Score: 3.91857 Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.17166 Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewmr7_2155
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr7_2156
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewmr7_2157
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewmr7_2158
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewmr7_2159
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewmr7_2160
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -166 | 3.9 | AAATTAGATCTGCATCATGTTA | Shewmr7_2155 |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp W3-18-1 | ||||
|
Position: -167
Score: 3.70145 Sequence: AAATTAGATCTGCGTCATGTTA
Position: -107
Score: 4.01474 Sequence: ATTCTTGATATACATCAATAAT
Locus tag: Sputw3181_1924
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sputw3181_1923
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sputw3181_1922
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sputw3181_1921
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sputw3181_1920
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sputw3181_1919
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
||||
| hyaA-hyaB-hydC-hyaD-hyaE-hyaF | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA | Sputw3181_1924 |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||