Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing hydC gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -172
Score: 3.44118
Sequence: AAGCATGACACACCTCATGTTA
Locus tag: Sama_1679
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sama_1678
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sama_1677
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sama_1676
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sama_1675
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sama_1674
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -172 3.4 AAGCATGACACACCTCATGTTA Sama_1679
Shewanella baltica OS155
Position: -229
Score: 3.92975
Sequence: TTAAGTGACCGATTTCATCCAA
Position: -167
Score: 3.73976
Sequence: AAATTAGATCTACGTCATGTTA
Position: -107
Score: 4.20997
Sequence: ATTCTTGATATACATCAAGAAT
Locus tag: Sbal_1889
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sbal_1888
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sbal_1887
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sbal_1886
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sbal_1885
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sbal_1884
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -229 3.9 TTAAGTGACCGATTTCATCCAA Sbal_1889
-167 3.7 AAATTAGATCTACGTCATGTTA
-107 4.2 ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400
Position: -174
Score: 3.76852
Sequence: TTTTGTTAACTTGATCAACATC
Position: -168
Score: 4.36595
Sequence: TAACTTGATCAACATCATAAAT
Locus tag: Sfri_2103
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sfri_2104
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sfri_2105
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sfri_2106
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sfri_2107
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sfri_2108
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -174 3.8 TTTTGTTAACTTGATCAACATC Sfri_2103
-168 4.4 TAACTTGATCAACATCATAAAT
Shewanella halifaxensis HAW-EB4
Position: -212
Score: 5.04352
Sequence: TTACGTGATCTCCATCACCTTT
Locus tag: Shal_2261
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shal_2262
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shal_2263
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shal_2264
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shal_2265
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shal_2266
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -212 5 TTACGTGATCTCCATCACCTTT Shal_2261
Shewanella loihica PV-4
Position: -164
Score: 3.80383
Sequence: AAACTTGATCCAGCTCATAGCT
Position: -103
Score: 3.70832
Sequence: AATGTTGACATACATCAACATT
Locus tag: Shew_1765
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shew_1764
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shew_1763
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shew_1762
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shew_1761
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shew_1760
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -164 3.8 AAACTTGATCCAGCTCATAGCT Shew_1765
-103 3.7 AATGTTGACATACATCAACATT
Shewanella oneidensis MR-1
Position: -105
Score: 3.97644
Sequence: ATTCTTGATATGCATCAATAAT
Locus tag: SO2099
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: SO2098
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: SO2097
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: SO2096
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: SO2095
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: SO2094
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -105 4 ATTCTTGATATGCATCAATAAT SO2099
Shewanella pealeana ATCC 700345
Position: -211
Score: 4.63119
Sequence: TTACGTGACCACGATCACCTTT
Locus tag: Spea_2033
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Spea_2032
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Spea_2031
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Spea_2030
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Spea_2029
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Spea_2028
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -211 4.6 TTACGTGACCACGATCACCTTT Spea_2033
Shewanella putrefaciens CN-32
Position: -167
Score: 3.70145
Sequence: AAATTAGATCTGCGTCATGTTA
Position: -107
Score: 4.01474
Sequence: ATTCTTGATATACATCAATAAT
Locus tag: Sputcn32_2088
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sputcn32_2089
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sputcn32_2090
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sputcn32_2091
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sputcn32_2092
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sputcn32_2093
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -167 3.7 AAATTAGATCTGCGTCATGTTA Sputcn32_2088
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sediminis HAW-EB3
Position: -162
Score: 3.97894
Sequence: AAAGATGATCTAGTTCATATTG
Locus tag: Ssed_1908
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Ssed_1907
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Ssed_1906
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Ssed_1905
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Ssed_1904
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Ssed_1903
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -162 4 AAAGATGATCTAGTTCATATTG Ssed_1908
Shewanella sp ANA-3
Position: -166
Score: 3.91857
Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.17166
Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewana3_1880
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewana3_1879
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewana3_1878
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewana3_1877
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewana3_1876
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewana3_1875
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -166 3.9 AAATTAGATCTGCATCATGTTA Shewana3_1880
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4
Position: -166
Score: 3.91857
Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.17166
Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewmr4_1822
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr4_1821
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewmr4_1820
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewmr4_1819
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewmr4_1818
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewmr4_1817
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -166 3.9 AAATTAGATCTGCATCATGTTA Shewmr4_1822
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7
Position: -166
Score: 3.91857
Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.17166
Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewmr7_2155
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr7_2156
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewmr7_2157
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewmr7_2158
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewmr7_2159
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewmr7_2160
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -166 3.9 AAATTAGATCTGCATCATGTTA Shewmr7_2155
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp W3-18-1
Position: -167
Score: 3.70145
Sequence: AAATTAGATCTGCGTCATGTTA
Position: -107
Score: 4.01474
Sequence: ATTCTTGATATACATCAATAAT
Locus tag: Sputw3181_1924
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sputw3181_1923
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sputw3181_1922
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sputw3181_1921
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sputw3181_1920
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sputw3181_1919
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA-hyaB-hydC-hyaD-hyaE-hyaF -167 3.7 AAATTAGATCTGCGTCATGTTA Sputw3181_1924
-107 4 ATTCTTGATATACATCAATAAT
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