Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nrfB gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -285
Score: 4.06654
Sequence: AAAAGAGACTTAGATCATATTT
Locus tag: Sama_2901
Name: null
Funciton: hypothetical protein
Locus tag: Sama_2902
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Sama_2903
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Sama_2904
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Sama_2901-nrfB-nrfC-nrfD-2 -285 4.1 AAAAGAGACTTAGATCATATTT Sama_2901
Shewanella baltica OS155
Position: -97
Score: 5.20192
Sequence: AAATGTGATCGTGTTCAAAAAA
Locus tag: Sbal_0180
Name: null
Funciton: hypothetical protein
Locus tag: Sbal_0181
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Sbal_0182
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Sbal_0183
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Sbal_0180-nrfB-nrfC-nrfD-2 -97 5.2 AAATGTGATCGTGTTCAAAAAA Sbal_0180
Shewanella frigidimarina NCIMB 400
Position: -115
Score: 3.65375
Sequence: TTAATTGATTACGATCAATTTA
Locus tag: Sfri_0616
Name: null
Funciton: hypothetical protein
Locus tag: Sfri_0615
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Sfri_0614
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Sfri_0613
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Sfri_0616-nrfB-nrfC-nrfD-2 -115 3.7 TTAATTGATTACGATCAATTTA Sfri_0616
Shewanella halifaxensis HAW-EB4
Position: -100
Score: 3.62988
Sequence: ATAATTGATTTGTATCAATGTT
Locus tag: Shal_0300
Name: null
Funciton: hypothetical protein
Locus tag: Shal_0301
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shal_0302
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shal_0303
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Shal_0300-nrfB-nrfC-nrfD-2 -100 3.6 ATAATTGATTTGTATCAATGTT Shal_0300
Shewanella loihica PV-4
Position: -286
Score: 3.87265
Sequence: AAAATAGATCTTGATCATATTT
Locus tag: Shew_3155
Name: null
Funciton: hypothetical protein
Locus tag: Shew_3156
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shew_3157
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shew_3158
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Shew_3155-nrfB-nrfC-nrfD-2 -286 3.9 AAAATAGATCTTGATCATATTT Shew_3155
Shewanella pealeana ATCC 700345
Position: -127
Score: 3.40276
Sequence: TTTTATGATGAATAAAACGTTC
Locus tag: Spea_3968
Name: null
Funciton: hypothetical protein
Locus tag: Spea_3967
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Spea_3966
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Spea_3965
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Spea_3968-nrfB-nrfC-nrfD-2 -127 3.4 TTTTATGATGAATAAAACGTTC Spea_3968
Shewanella piezotolerans WP3
Position: -97
Score: 3.34695
Sequence: TTATATAATGATTTTTATATTT
Locus tag: swp_4118
Name: null
Funciton: hypothetical protein
Locus tag: swp_4117
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: swp_4116
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: swp_4115
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
swp_4118-nrfB-nrfC-nrfD-2 -97 3.3 TTATATAATGATTTTTATATTT swp_4118
Shewanella putrefaciens CN-32
Position: -99
Score: 4.31656
Sequence: AAGTGTGATGCTGGTCAATAAA
Locus tag: Sputcn32_0312
Name: null
Funciton: hypothetical protein
Locus tag: Sputcn32_0313
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Sputcn32_0314
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Sputcn32_0315
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Sputcn32_0312-nrfB-nrfC-nrfD-2 -99 4.3 AAGTGTGATGCTGGTCAATAAA Sputcn32_0312
Shewanella sediminis HAW-EB3
Position: -100
Score: 4.06844
Sequence: TTGTTTGATTTAAATCAAGGTT
Locus tag: Ssed_0240
Name: null
Funciton: hypothetical protein
Locus tag: Ssed_0241
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Ssed_0242
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Ssed_0243
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Ssed_0240-nrfB-nrfC-nrfD-2 -100 4.1 TTGTTTGATTTAAATCAAGGTT Ssed_0240
Shewanella sp ANA-3
Position: -99
Score: 5.23204
Sequence: AAATGTGATCTATGTCAAAAAA
Locus tag: Shewana3_3963
Name: null
Funciton: hypothetical protein
Locus tag: Shewana3_3962
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shewana3_3961
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shewana3_3960
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Shewana3_3963-nrfB-nrfC-nrfD-2 -99 5.2 AAATGTGATCTATGTCAAAAAA Shewana3_3963
Shewanella sp MR-4
Position: -99
Score: 5.23204
Sequence: AAATGTGATCTATGTCAAAAAA
Locus tag: Shewmr4_3765
Name: null
Funciton: hypothetical protein
Locus tag: Shewmr4_3764
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shewmr4_3763
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shewmr4_3762
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Shewmr4_3765-nrfB-nrfC-nrfD-2 -99 5.2 AAATGTGATCTATGTCAAAAAA Shewmr4_3765
Shewanella sp MR-7
Position: -99
Score: 5.19373
Sequence: AAATGTGATCTGTGTCAAAAAA
Locus tag: Shewmr7_3838
Name: null
Funciton: hypothetical protein
Locus tag: Shewmr7_3837
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shewmr7_3836
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shewmr7_3835
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Shewmr7_3838-nrfB-nrfC-nrfD-2 -99 5.2 AAATGTGATCTGTGTCAAAAAA Shewmr7_3838
Shewanella sp W3-18-1
Position: -99
Score: 4.24289
Sequence: AAGTGTGATACTGGTCAATAAA
Locus tag: Sputw3181_3896
Name: null
Funciton: hypothetical protein
Locus tag: Sputw3181_3895
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Sputw3181_3894
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Sputw3181_3893
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Sputw3181_3896-nrfB-nrfC-nrfD-2 -99 4.2 AAGTGTGATACTGGTCAATAAA Sputw3181_3896
Shewanella woodyi ATCC 51908
Position: -92
Score: 3.98241
Sequence: TAACTTGATTTGAATCAATATT
Locus tag: Swoo_0239
Name: null
Funciton: hypothetical protein
Locus tag: Swoo_0240
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Swoo_0241
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Swoo_0242
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Swoo_0239-nrfB-nrfC-nrfD-2 -92 4 TAACTTGATTTGAATCAATATT Swoo_0239
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